Negative stain EM map of SARS CoV-2 spike protein (trimer)
Zost SJ, Gilchuk P, Case JB, Binshtein E, Chen RE, Nkolola JP, Schafer A, Reidy JX, Trivette A, Nargi RS, Sutton RE, Suryadevara N, Martinez DR, Williamson LE, Chen EC, Jones T, Day S, Myers L, Hassan AO, Kafai NM, Winkler ES, Fox JM, Shrihari S, Mueller BK, Meiler J, Chandrashekar A, Mercado NB, Steinhardt JJ, Ren K, Loo YM, Kallewaard NL, McCune BT, Keeler SP, Holtzman MJ, Barouch DH, Gralinski LE, Baric RS, Thackray LB, Diamond MS, Carnahan RH, Crowe Jr JE
Nature (2020) 584 pp. 443-449 [ Pubmed: 32668443 DOI: doi:10.1038/s41586-020-2548-6 ]
Negative stain EM map of SARS-CoV-2 spike protein (trimer) with Fab COV2-2165
Zost SJ, Gilchuk P, Case JB, Binshtein E, Chen RE, Nkolola JP, Schafer A, Reidy JX, Trivette A, Nargi RS, Sutton RE, Suryadevara N, Martinez DR, Williamson LE, Chen EC, Jones T, Day S, Myers L, Hassan AO, Kafai NM, Winkler ES, Fox JM, Shrihari S, Mueller BK, Meiler J, Chandrashekar A, Mercado NB, Steinhardt JJ, Ren K, Loo YM, Kallewaard NL, McCune BT, Keeler SP, Holtzman MJ, Barouch DH, Gralinski LE, Baric RS, Thackray LB, Diamond MS, Carnahan RH, Crowe Jr JE
Nature (2020) 584 pp. 443-449 [ Pubmed: 32668443 DOI: doi:10.1038/s41586-020-2548-6 ]
Negative stain EM map of SARS-CoV-2 spike protein (trimer) with Fab COV2-2196
Zost SJ, Gilchuk P, Case JB, Binshtein E, Chen RE, Nkolola JP, Schafer A, Reidy JX, Trivette A, Nargi RS, Sutton RE, Suryadevara N, Martinez DR, Williamson LE, Chen EC, Jones T, Day S, Myers L, Hassan AO, Kafai NM, Winkler ES, Fox JM, Shrihari S, Mueller BK, Meiler J, Chandrashekar A, Mercado NB, Steinhardt JJ, Ren K, Loo YM, Kallewaard NL, McCune BT, Keeler SP, Holtzman MJ, Barouch DH, Gralinski LE, Baric RS, Thackray LB, Diamond MS, Carnahan RH, Crowe Jr JE
Nature (2020) 584 pp. 443-449 [ Pubmed: 32668443 DOI: doi:10.1038/s41586-020-2548-6 ]
Negative stain EM map of SARS-CoV-2 spike protein (trimer) with Fab COV2-2130
Zost SJ, Gilchuk P, Case JB, Binshtein E, Chen RE, Nkolola JP, Schafer A, Reidy JX, Trivette A, Nargi RS, Sutton RE, Suryadevara N, Martinez DR, Williamson LE, Chen EC, Jones T, Day S, Myers L, Hassan AO, Kafai NM, Winkler ES, Fox JM, Shrihari S, Mueller BK, Meiler J, Chandrashekar A, Mercado NB, Steinhardt JJ, Ren K, Loo YM, Kallewaard NL, McCune BT, Keeler SP, Holtzman MJ, Barouch DH, Gralinski LE, Baric RS, Thackray LB, Diamond MS, Carnahan RH, Crowe Jr JE
Nature (2020) 584 pp. 443-449 [ Pubmed: 32668443 DOI: doi:10.1038/s41586-020-2548-6 ]
Negative stain EM map of SARS-CoV-2 spike protein (trimer) with Fab COV2-2130 and Fab COV2-2196
Zost SJ, Gilchuk P, Case JB, Binshtein E, Chen RE, Nkolola JP, Schafer A, Reidy JX, Trivette A, Nargi RS, Sutton RE, Suryadevara N, Martinez DR, Williamson LE, Chen EC, Jones T, Day S, Myers L, Hassan AO, Kafai NM, Winkler ES, Fox JM, Shrihari S, Mueller BK, Meiler J, Chandrashekar A, Mercado NB, Steinhardt JJ, Ren K, Loo YM, Kallewaard NL, McCune BT, Keeler SP, Holtzman MJ, Barouch DH, Gralinski LE, Baric RS, Thackray LB, Diamond MS, Carnahan RH, Crowe Jr JE
Nature (2020) 584 pp. 443-449 [ Pubmed: 32668443 DOI: doi:10.1038/s41586-020-2548-6 ]
Structure of Influenza Hemagglutinin ectodomain (A/duck/Alberta/35/76)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6hjn
Q-score: 0.509
Benton DJ, Nans A, Calder LJ, Turner J, Neu U, Lin YP, Ketelaars E, Kallewaard NL, Corti D, Lanzavecchia A, Gamblin SJ, Rosenthal PB, Skehel JJ
PNAS (2018) 115 pp. 10112-10117 [ Pubmed: 30224494 DOI: doi:10.1073/pnas.1810927115 ]
- Hemagglutinin (35 kDa, Protein from Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1))
- Unknown branched fragment of phospholipid (478 Da, Ligand)
- A/duck/alberta/35/76 hemagglutinin ectodomain (170 kDa, Complex from Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1))
- Hemagglutinin (19 kDa, Protein from Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1))
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6hjp
Q-score: 0.486
Benton DJ, Nans A, Calder LJ, Turner J, Neu U, Lin YP, Ketelaars E, Kallewaard NL, Corti D, Lanzavecchia A, Gamblin SJ, Rosenthal PB, Skehel JJ
PNAS (2018) 115 pp. 10112-10117 [ Pubmed: 30224494 DOI: doi:10.1073/pnas.1810927115 ]
- Heavy chain of fisw84 fab fragment (22 kDa, Protein from Homo sapiens)
- Fisw84 fab fragment (Complex from Homo sapiens)
- Unknown branched fragment of phospholipid (478 Da, Ligand)
- Hemagglutinin (35 kDa, Protein from Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1))
- Hemagglutinin (19 kDa, Protein from Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1))
- Complex of a/duck/alberta/35/76 haemagglutinin and fisw84 fab fragment (300 kDa, Complex)
- A/duck/alberta/35/76 haemagglutinin (Complex from Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1))
- Light chain of fisw84 fab fragment (23 kDa, Protein from Homo sapiens)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6hjq
Q-score: 0.376
Benton DJ, Nans A, Calder LJ, Turner J, Neu U, Lin YP, Ketelaars E, Kallewaard NL, Corti D, Lanzavecchia A, Gamblin SJ, Rosenthal PB, Skehel JJ
PNAS (2018) 115 pp. 10112-10117 [ Pubmed: 30224494 DOI: doi:10.1073/pnas.1810927115 ]
- A/duck/alberta/35/76 hemagglutinin (Complex from Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1))
- Fisw84 fab fragment (Complex from Homo sapiens)
- Heavy chain of fisw84 fab (22 kDa, Protein from Homo sapiens)
- Hemagglutinin (35 kDa, Protein from Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1))
- Complex of full-length a/duck/alberta/35/76 hemagglutinin and fisw84 fab fragment (300 kDa, Complex)
- Light chain of fisw84 fab (23 kDa, Protein from Homo sapiens)
- Hemagglutinin (22 kDa, Protein from Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1))
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6hjr
Q-score: 0.39
Benton DJ, Nans A, Calder LJ, Turner J, Neu U, Lin YP, Ketelaars E, Kallewaard NL, Corti D, Lanzavecchia A, Gamblin SJ, Rosenthal PB, Skehel JJ
PNAS (2018) 115 pp. 10112-10117 [ Pubmed: 30224494 DOI: doi:10.1073/pnas.1810927115 ]
- Hemagglutinin (35 kDa, Protein from Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- A/duck/alberta/35/76 hemagglutinin ectodomain (170 kDa, Complex from Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1))
- Hemagglutinin (23 kDa, Protein from Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1))