Structure of mutant 30S subunit with extended helix 26, version 3
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 9duk
Q-score: 0.446
Boyko KV, Bernstein RA, Kim M, Cate JHD
Biochemistry (2025) 64 pp. 710-718 [ DOI: doi:10.1021/acs.biochem.4c00688 Pubmed: 39854700 ]
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- 30s subunit (Complex from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- 16s rrna (497 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us2 (25 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
Structure of mutant 30S subunit with extended helix 26, version 4
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 9dul
Q-score: 0.51
Boyko KV, Bernstein RA, Kim M, Cate JHD
Biochemistry (2025) 64 pp. 710-718 [ DOI: doi:10.1021/acs.biochem.4c00688 Pubmed: 39854700 ]
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs16 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs18 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Escherichia coli)
- 30s subunit (Complex from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs21 (8 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us5 (17 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us4 (23 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us7 (20 kDa, Protein from Escherichia coli)
- 16s rrna (496 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein bs6 (15 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us3 (26 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us12 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us2 (25 kDa, Protein from Escherichia coli)
Oh S, Lee J, Choi HJ, Kim S, Sapuru V, Kim M, Hite RK
J Am Chem Soc (2024) 146 pp. 23230-23239 [ Pubmed: 39116214 DOI: doi:10.1021/jacs.4c05623 ]
- (2p,2'p)-2,2'-(1,3-phenylene)di(pyridin-4-amine) (262 Da, Ligand)
- Human tmem175 in an inhibitor-bound state (55 MDa, Complex from Homo sapiens)
- Endosomal/lysosomal potassium channel tmem175 (55 kDa, Protein from Homo sapiens)
Oh S, Lee J, Choi HJ, Kim S, Sapuru V, Kim M, Hite RK
J Am Chem Soc (2024) 146 pp. 23230-23239 [ Pubmed: 39116214 DOI: doi:10.1021/jacs.4c05623 ]
- 2-phenylpyridin-4-amine (170 Da, Ligand)
- Human tmem175 in an inhibitor-bound state (55 MDa, Complex from Homo sapiens)
- Endosomal/lysosomal potassium channel tmem175 (55 kDa, Protein from Homo sapiens)
Orf virus scaffolding protein Orfv075
Resolution: 1.9 Å
EM Method: Single-particle
Fitted PDBs: 9ikc
Q-score: 0.763
Kim S, Ko S, Kim M, Jang Y, Hyun J
Biochem Biophys Res Commun (2024) 728 pp. 150334-150334 [ Pubmed: 38968773 DOI: doi:10.1016/j.bbrc.2024.150334 ]
- Orfv075 trimer (190 kDa, Complex from Orf virus (strain NZ2))
- Water (18 Da, Ligand)
- 62 kda protein (63 kDa, Protein from Orf virus (strain NZ2))
Human Cx36/GJD2 (N-terminal deletion mutant) gap junction channel in soybean lipids (D6 symmetry)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7xl8
Q-score: 0.532
Lee SN, Cho HJ, Jeong H, Ryu B, Lee HJ, Kim M, Yoo J, Woo JS, Lee HH
Nat Commun (2023) 14 pp. 1347-1347 [ Pubmed: 36906653 DOI: doi:10.1038/s41467-023-37040-8 ]
- Cx36-deln8 (Complex from Homo sapiens)
- 1,2-dimyristoyl-rac-glycero-3-phosphocholine (677 Da, Ligand)
- Gap junction delta-2 protein (36 kDa, Protein from Homo sapiens)
Human Cx36/GJD2 gap junction channel in detergents
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7xkk
Q-score: 0.545
Lee SN, Cho HJ, Jeong H, Ryu B, Lee HJ, Kim M, Yoo J, Woo JS, Lee HH
Nat Commun (2023) 14 pp. 1347-1347 [ Pubmed: 36906653 DOI: doi:10.1038/s41467-023-37040-8 ]
- Cx36 (Complex from Homo sapiens)
- Gap junction delta-2 protein (37 kDa, Protein from Homo sapiens)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7xki
Q-score: 0.43
Lee SN, Cho HJ, Jeong H, Ryu B, Lee HJ, Kim M, Yoo J, Woo JS, Lee HH
Nat Commun (2023) 14 pp. 1347-1347 [ Pubmed: 36906653 DOI: doi:10.1038/s41467-023-37040-8 ]
- Cx36-bril-deln16 (Complex from Homo sapiens)
- Gap junction delta-2 protein,soluble cytochrome b562 (39 kDa, Protein from Homo sapiens)
- 1,2-dimyristoyl-rac-glycero-3-phosphocholine (677 Da, Ligand)
Human Cx36/GJD2 (BRIL-fused mutant) gap junction channel in detergents at 2.2 Angstroms resolution
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 7xkt
Q-score: 0.649
Lee SN, Cho HJ, Jeong H, Ryu B, Lee HJ, Kim M, Yoo J, Woo JS, Lee HH
Nat Commun (2023) 14 pp. 1347-1347 [ Pubmed: 36906653 DOI: doi:10.1038/s41467-023-37040-8 ]
- Gap junction delta-2 protein,soluble cytochrome b562 (40 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Cx36-bril (Complex from Homo sapiens)
- 1,2-dimyristoyl-rac-glycero-3-phosphocholine (677 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Human Cx36/GJD2 gap junction channel with pore-lining N-terminal helices in soybean lipids
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7xnh
Q-score: 0.623
Lee SN, Cho HJ, Jeong H, Ryu B, Lee HJ, Kim M, Yoo J, Woo JS, Lee HH
Nat Commun (2023) 14 pp. 1347-1347 [ Pubmed: 36906653 DOI: doi:10.1038/s41467-023-37040-8 ]
- Cx36 (Complex from Homo sapiens)
- Gap junction delta-2 protein (37 kDa, Protein from Homo sapiens)
- 1,2-dimyristoyl-rac-glycero-3-phosphocholine (677 Da, Ligand)