Structure of photosynthetic LH1-RC complex from the purple bacterium Blastochloris tepida
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9j2f
Q-score: 0.725
Kimura Y, Kanno R, Mori K, Matsuda Y, Seto R, Takenaka S, Mino H, Ohkubo T, Honda M, Sasaki YC, Kishikawa J, Mitsuoka K, Mio K, Hall M, Purba ER, Mochizuki T, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo Z-Y, Tani K
To Be Published
- Cardiolipin (1 kDa, Ligand)
- Antenna complex alpha/beta subunit domain-containing protein (7 kDa, Protein from Blastochloris tepida)
- Menaquinone-7 (648 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Photosynthetic lh1-rc complex of blastochloris tepida (Complex from Blastochloris tepida)
- Light-harvesting protein b-1015 gamma chain (5 kDa, Protein from Blastochloris tepida)
- Magnesium ion (24 Da, Ligand)
- All-trans-1,2-dihydroneurosporene (540 Da, Ligand)
- Photosynthetic reaction center cytochrome c subunit (39 kDa, Protein from Blastochloris tepida)
- Light-harvesting protein gamma1 (5 kDa, Protein from Blastochloris tepida)
- Bacteriochlorophyll b (909 Da, Ligand)
- Photosynthetic reaction center subunit h (28 kDa, Protein from Blastochloris tepida)
- Reaction center protein l chain (30 kDa, Protein from Blastochloris tepida)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Ubiquinone-8 (727 Da, Ligand)
- Heme c (618 Da, Ligand)
- Reaction center protein m chain (37 kDa, Protein from Blastochloris tepida)
- Fe (iii) ion (55 Da, Ligand)
- Antenna complex alpha/beta subunit domain-containing protein (7 kDa, Protein from Blastochloris tepida)
- Water (18 Da, Ligand)
- 15-cis-1,2-dihydroneurosporene (540 Da, Ligand)
- Diacyl glycerol (625 Da, Ligand)
- Bacteriopheophytin b (887 Da, Ligand)
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 [ DOI: 10.1038/s41598-023-29396-0 Pubmed: 36755111 ]
Image sets:
GroEL on hydrophilized graphene grid (low particle density)
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 [ DOI: 10.1038/s41598-023-29396-0 Pubmed: 36755111 ]
Image sets:
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 [ DOI: 10.1038/s41598-023-29396-0 Pubmed: 36755111 ]
Image sets:
SARS-CoV-2 spike protein (1-up RBD) on EG-grid
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 [ DOI: 10.1038/s41598-023-29396-0 Pubmed: 36755111 ]
Image sets:
SARS-CoV-2 spike protein (1-up RBD) on Quantifoil grid
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 [ DOI: 10.1038/s41598-023-29396-0 Pubmed: 36755111 ]
Image sets:
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 [ DOI: 10.1038/s41598-023-29396-0 Pubmed: 36755111 ]
Image sets:
GroEL on hydrophilized graphene grid (high particle density)
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 [ DOI: 10.1038/s41598-023-29396-0 Pubmed: 36755111 ]
Image sets:
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 [ DOI: 10.1038/s41598-023-29396-0 Pubmed: 36755111 ]
Image sets:
GroEL on EG-grid stored for 3 months after graphene oxidation
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 [ DOI: 10.1038/s41598-023-29396-0 Pubmed: 36755111 ]
Image sets: