Electron Microscopy Data Bank

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Release date: Sept. 30, 2020
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 6yac
Q-score: 0.601

Caspy I, Borovikova-Sheinker A, Klaiman D, Shkolnisky Y, Nelson N

Nat Plants (2020) 6 pp. 1300-1305 [ Pubmed: 33020607 DOI: doi:10.1038/s41477-020-00779-9 ]

Sample:

Psae (7 kDa, Protein from Pea)
Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Pea)
Pea photosystem i in complex with ferredoxin (660 kDa, Complex from Pisum sativum)
Psal (16 kDa, Protein from Pea)
Ferredoxin-1, chloroplastic (10 kDa, Protein from Pea)
Beta-carotene (536 Da, Ligand)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Psad (16 kDa, Protein from Pea)
Chlorophyll a-b binding protein 3, chloroplastic (24 kDa, Protein from Pea)
Photosystem i reaction center subunit ix (4 kDa, Protein from Pea)
Dodecyl-beta-d-maltoside (510 Da, Ligand)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Iron/sulfur cluster (351 Da, Ligand)
Lhca1 (21 kDa, Protein from Pea)
Psag (10 kDa, Protein from Pea)
Chlorophyll b (907 Da, Ligand)
(1~{s})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(4~{s})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol (568 Da, Ligand)
Calcium ion (40 Da, Ligand)
Photosystem i reaction center subunit viii (3 kDa, Protein from Pea)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Photosystem i iron-sulfur center (8 kDa, Protein from Pea)
Phylloquinone (450 Da, Ligand)
Chlorophyll a-b binding protein p4, chloroplastic (21 kDa, Protein from Pea)
Psah (9 kDa, Protein from Pea)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Pea)
Chlorophyll a (893 Da, Ligand)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Water (18 Da, Ligand)
Photosystem i reaction center subunit x psak (8 kDa, Protein from Pea)
Psaf (17 kDa, Protein from Pea)
Chlorophyll a isomer (893 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Pea)

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