Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 8tqi
Q-score: 0.499
Suryadevara N, Otrelo-Cardoso AR, Kose N, Hu YX, Binshtein E, Wolters RM, Greninger AL, Handal LS, Carnahan RH, Moscona A, Jardetzky TS, Crowe Jr JE
Nat Microbiol (2024) 9 pp. 2128-2143 [ Pubmed: 38858594 DOI: doi:10.1038/s41564-024-01722-w ]
- Light chain fab rpiv3-23 (23 kDa, Protein from Homo sapiens)
- Hemagglutinin-neuraminidase glycoprotein (Complex from Human respirovirus 3)
- Recombinant rpiv3-28 fab (Complex from Homo sapiens)
- Heavy chain fab rpiv3-28 (23 kDa, Protein from Homo sapiens)
- Light chain fab rpiv3-28 (23 kDa, Protein from Homo sapiens)
- Heavy chain fab rpiv3-23 (24 kDa, Protein from Homo sapiens)
- Hemagglutinin-neuraminidase (50 kDa, Protein from Human respirovirus 3)
- Hpiv3 hn in complex with rpiv3-23 and rpiv3-28 fabs (Complex from Human respirovirus 3)
- Recombinant rpiv3-23 fab (Complex from Homo sapiens)
Human parainfluenza virus type 3 prefusion F trimer in complex with rPIV3-18 Fab
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8tqk
Q-score: 0.451
Suryadevara N, Otrelo-Cardoso AR, Kose N, Hu YX, Binshtein E, Wolters RM, Greninger AL, Handal LS, Carnahan RH, Moscona A, Jardetzky TS, Crowe Jr JE
Nat Microbiol (2024) 9 pp. 2128-2143 [ Pubmed: 38858594 DOI: doi:10.1038/s41564-024-01722-w ]
- Light chain fab rpiv3-28 (23 kDa, Protein from Homo sapiens)
- Fusion glycoprotein f0 (57 kDa, Protein from Human respirovirus 3)
- Hpiv3 prefusion f trimer in complex with rpiv3-18 fab (Complex from Human respirovirus 3)
- Rpiv3-18 heavy chain (Complex from Homo sapiens)
- Heavy chain fab rpiv3-18 (23 kDa, Protein from Homo sapiens)
- Fusion glycoprotein f0 (Complex from Human respirovirus 3)
- Rpiv3-18 light chain (Complex from Homo sapiens)
RSV F trimer bound to RSV-199 Fab
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 8dzw
Q-score: 0.569
Wen X, Suryadevara N, Kose N, Liu J, Zhan X, Handal LS, Williamson LE, Trivette A, Carnahan RH, Jardetzky TS, Crowe Jr JE
Cell Host Microbe (2023) 31 pp. 1288-1300.e6 [ Pubmed: 37516111 DOI: doi:10.1016/j.chom.2023.07.002 ]
- Rsv fusion protein (53 kDa, Protein from Human respiratory syncytial virus A2)
- Rsv-199 light chain protein (22 kDa, Protein from Homo sapiens)
- Rsv fusion protein complex with rsv-199 fab (Complex from Human respiratory syncytial virus A2)
- Rsv-199 heavy chain protein (24 kDa, Protein from Homo sapiens)
HMPV F monomer bound to RSV-199 Fab
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 8e2u
Q-score: 0.457
Wen X, Suryadevara N, Kose N, Liu J, Zhan X, Handal LS, Williamson LE, Trivette A, Carnahan RH, Jardetzky TS, Crowe Jr JE
Cell Host Microbe (2023) 31 pp. 1288-1300.e6 [ Pubmed: 37516111 DOI: doi:10.1016/j.chom.2023.07.002 ]
- Rsv-199 heavy chain (24 kDa, Protein from Homo sapiens)
- Fusion glycoprotein f0 (47 kDa, Protein from Human metapneumovirus A)
- Mpv fusion protein complex with rsv-199 fab (Complex from Human metapneumovirus)
- Rsv-199 light chain (22 kDa, Protein from Homo sapiens)
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 8eay
Q-score: 0.403
Wen X, Suryadevara N, Kose N, Liu J, Zhan X, Handal LS, Williamson LE, Trivette A, Carnahan RH, Jardetzky TS, Crowe Jr JE
Cell Host Microbe (2023) 31 pp. 1288-1300.e6 [ Pubmed: 37516111 DOI: doi:10.1016/j.chom.2023.07.002 ]
- 4i3 light chain protein (11 kDa, Protein from Homo sapiens)
- 4i3 heavy chain protein (13 kDa, Protein from Homo sapiens)
- Fusion glycoprotein f0 (45 kDa, Protein from Human metapneumovirus A)
- Mpv fusion protein complex with 4i3 fab (Complex from Human metapneumovirus)
HMPV F dimer bound to RSV-199 Fab
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 8ebp
Q-score: 0.426
Wen X, Suryadevara N, Kose N, Liu J, Zhan X, Handal LS, Williamson LE, Trivette A, Carnahan RH, Jardetzky TS, Crowe Jr JE
Cell Host Microbe (2023) 31 pp. 1288-1300.e6 [ Pubmed: 37516111 DOI: doi:10.1016/j.chom.2023.07.002 ]
- Rsv-199 heavy chain protein (24 kDa, Protein from Homo sapiens)
- Rsv-199 light chain protein (22 kDa, Protein from Homo sapiens)
- Mpv fusion protein complex with rsv-199 fab (Complex from Human metapneumovirus)
- Fusion glycoprotein f0 (47 kDa, Protein from Human metapneumovirus A)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7sfv
Q-score: 0.324
Kafai NM, Williamson LE, Binshtein E, Sukupolvi-Petty S, Gardner CL, Liu J, Mackin S, Kim AS, Kose N, Carnahan RH, Jung A, Droit L, Reed DS, Handley SA, Klimstra WB, Crowe JE, Diamond MS
J Exp Med (2022) 219 [ Pubmed: 35297953 DOI: doi:10.1084/jem.20212532 ]
- Spike glycoprotein e2 (46 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Capsid protein (17 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Venezuelan equine encephalitis virus (strain tc-83) (Virus from Venezuelan equine encephalitis virus (strain TC-83))
- Hveev-63 fab heavy chain (23 kDa, Protein from Homo sapiens)
- Hveev-63 fab light chain (22 kDa, Protein from Homo sapiens)
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7sfw
Q-score: 0.508
Kafai NM, Williamson LE, Binshtein E, Sukupolvi-Petty S, Gardner CL, Liu J, Mackin S, Kim AS, Kose N, Carnahan RH, Jung A, Droit L, Reed DS, Handley SA, Klimstra WB, Crowe JE, Diamond MS
J Exp Med (2022) 219 [ Pubmed: 35297953 DOI: doi:10.1084/jem.20212532 ]
- Spike glycoprotein e2 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Hveev-63 fab light chain (11 kDa, Protein from Homo sapiens)
- Capsid protein (30 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- Venezuelan equine encephalitis virus (strain tc-83) (Virus from Venezuelan equine encephalitis virus (strain TC-83))
- Hveev-63 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein e1 (47 kDa, Protein from Venezuelan equine encephalitis virus (strain TC-83))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
CryoEM structure of Eastern Equine Encephalitis (EEEV) VLP with Fab EEEV-143.
Resolution: 8.5 Å
EM Method: Single-particle
Fitted PDBs: 6xob
Q-score: 0.182
Williamson LE, Gilliland Jr T, Yadav PK, Binshtein E, Bombardi R, Kose N, Nargi RS, Sutton RE, Durie CL, Armstrong E, Carnahan RH, Walker LM, Kim AS, Fox JM, Diamond MS, Ohi MD, Klimstra WB, Crowe Jr JE
Cell (2020) 183 pp. 1884-1900.e23 [ Pubmed: 33301709 DOI: doi:10.1016/j.cell.2020.11.011 ]
- Togavirin (47 kDa, Protein from Eastern equine encephalitis virus)
- Eeev-143 fab heavy chain (23 kDa, Protein from Homo sapiens)
- Togavirin (29 kDa, Protein from Eastern equine encephalitis virus)
- Togavirin (47 kDa, Protein from Eastern equine encephalitis virus)
- Eastern equine encephalitis virus (Virus from Eastern equine encephalitis virus)
- Eeev-143 fab light chain (23 kDa, Protein from Homo sapiens)
Resolution: 6.33 Å
EM Method: Single-particle
Fitted PDBs: 6vyv
Q-score: 0.339
Powell LA, Miller A, Fox JM, Kose N, Klose T, Kim AS, Bombardi R, Tennekoon RN, Dharshan de Silva A, Carnahan RH, Diamond MS, Rossmann MG, Kuhn RJ, Crowe Jr JE
Cell Host Microbe (2020) 28 pp. 699-711.e7 [ DOI: doi:10.1016/j.chom.2020.07.008 Pubmed: 32783883 ]
- Ross river virus (strain t48) (Virus from Ross river virus (strain T48))
- Fab chk-265 light chain (22 kDa, Protein from Homo sapiens)
- E2 glycoprotein (38 kDa, Protein from Ross river virus (strain T48))
- Fab chk-265 heavy chain (23 kDa, Protein from Homo sapiens)
- E1 glycoprotein (42 kDa, Protein from Ross river virus (strain T48))