Cryo-EM structure of T4 Bacteriophage Clamp Loader with Sliding Clamp and DNA
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 8unf
Q-score: 0.447
Marcus K, Huang Y, Subramanian S, Gee CL, Gorday K, Ghaffari-Kashani S, Luo XR, Zheng L, O'Donnell M, Subramaniam S, Kuriyan J
Nat Struct Mol Biol (2024) 31 pp. 424-435 [ Pubmed: 38177685 DOI: doi:10.1038/s41594-023-01177-3 ]
- [[[(2r,3s,4r,5r)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium (492 Da, Ligand)
- T4 bacteriophage clamp loader subunit a (gp62) (Complex from Tequatrovirus T4)
- Sliding-clamp-loader large subunit (35 kDa, Protein from Tequatrovirus T4)
- T4 bacteriophage clamp loader (gp44 + gp62) (Complex from Tequatrovirus T4)
- T4 bacteriophage clamp loader subunits b,c,d,e(gp44) (Complex from Tequatrovirus T4)
- Sliding clamp (24 kDa, Protein from Tequatrovirus T4)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- T4 bacteriophage clamp loader with sliding clamp and dna (gp44+gp62+gp45+dna) (Complex from Tequatrovirus T4)
- T4 bacteriophage sliding clamp (gp45) (Complex from Tequatrovirus T4)
- Template dna (7 kDa, DNA from Tequatrovirus T4)
- Primed dna duplex (Complex from Tequatrovirus T4)
- Primer dna (6 kDa, DNA from Tequatrovirus T4)
- Sliding-clamp-loader small subunit (21 kDa, Protein from Tequatrovirus T4)
Cryo-EM structure of T4 Bacteriophage Clamp Loader with Sliding Clamp
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8unh
Q-score: 0.445
Marcus K, Huang Y, Subramanian S, Gee CL, Gorday K, Ghaffari-Kashani S, Luo XR, Zheng L, O'Donnell M, Subramaniam S, Kuriyan J
Nat Struct Mol Biol (2024) 31 pp. 424-435 [ Pubmed: 38177685 DOI: doi:10.1038/s41594-023-01177-3 ]
- T4 bacteriophage clamp loader with sliding clamp (Complex from Tequatrovirus T4)
- Magnesium ion (24 Da, Ligand)
- Sliding-clamp-loader large subunit (35 kDa, Protein from Tequatrovirus T4)
- T4 bacteriophage clamp loader (gp44 + gp62) (Complex from Tequatrovirus T4)
- Sliding clamp (24 kDa, Protein from Tequatrovirus T4)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- T4 bacteriophage sliding clamp (gp45) (Complex from Tequatrovirus T4)
- Sliding-clamp-loader small subunit (21 kDa, Protein from Tequatrovirus T4)
Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with extended HR2
Yang K, Wang C, Kreutzberger AJB, Ojha R, Kuivanen S, Couoh-Cardel S, Muratcioglu S, Eisen TJ, White KI, Held RG, Subramanian S, Marcus K, Pfuetzner RA, Esquivies L, Doyle CA, Kuriyan J, Vapalahti O, Balistreri G, Kirchhausen T, Brunger AT
Proc Natl Acad Sci U S A (2022) 119 [ DOI: 10.1073/pnas.2210990119 Pubmed: 36122200 ]
Image sets:
Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with extended HR2
Resolution: 2.22 Å
EM Method: Single-particle
Fitted PDBs: 8czi
Q-score: 0.489
Yang K, Wang C, Kreutzberger AJB, Ojha R, Kuivanen S, Couoh-Cardel S, Muratcioglu S, Eisen TJ, White KI, Held RG, Subramanian S, Marcus K, Pfuetzner RA, Esquivies L, Doyle CA, Kuriyan J, Vapalahti O, Balistreri G, Kirchhausen T, Brunger AT
PNAS (2022) 119 pp. e2210990119-e2210990119 [ Pubmed: 36122200 DOI: doi:10.1073/pnas.2210990119 ]
Kondo Y, Ognjenović J, Banerjee S, Karandur D, Merk A, Kulhanek K, Wong K, Roose JP, Subramaniam S, Kuriyan J
Science (2019) 366 pp. 109-115 [ Pubmed: 31604311 DOI: 10.1126/science.aay0543 ]
Image sets:
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7syd
Q-score: 0.481
Huang Y, Ognjenovic J, Karandur D, Miller K, Merk A, Subramaniam S, Kuriyan J
eLife (2021) 10 [ DOI: doi:10.7554/eLife.73218 Pubmed: 34846302 ]
- Full-length human egfr:egf complex (Complex from Homo sapiens)
- Epidermal growth factor (6 kDa, Protein from Homo sapiens)
- Epidermal growth factor receptor (134 kDa, Protein from Homo sapiens)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7sye
Q-score: 0.426
Huang Y, Ognjenovic J, Karandur D, Miller K, Merk A, Subramaniam S, Kuriyan J
eLife (2021) 10 [ DOI: doi:10.7554/eLife.73218 Pubmed: 34846302 ]
- Epidermal growth factor receptor (134 kDa, Protein from Homo sapiens)
- Epidermal growth factor (6 kDa, Protein from Homo sapiens)
- Full-length human egfr:egf complex (Complex)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7sz0
Q-score: 0.463
Huang Y, Ognjenovic J, Karandur D, Miller K, Merk A, Subramaniam S, Kuriyan J
eLife (2021) 10 [ DOI: doi:10.7554/eLife.73218 Pubmed: 34846302 ]
- Epidermal growth factor receptor (134 kDa, Protein from Homo sapiens)
- Epidermal growth factor (6 kDa, Protein from Homo sapiens)
- Full-length human egfr(l834r):egf complex (Complex)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7sz1
Q-score: 0.413
Huang Y, Ognjenovic J, Karandur D, Miller K, Merk A, Subramaniam S, Kuriyan J
eLife (2021) 10 [ DOI: doi:10.7554/eLife.73218 Pubmed: 34846302 ]
- Epidermal growth factor receptor (134 kDa, Protein from Homo sapiens)
- Epidermal growth factor (6 kDa, Protein from Homo sapiens)
- Full-length human egfr(l834r):egf complex (Complex)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7sz5
Q-score: 0.41
Huang Y, Ognjenovic J, Karandur D, Miller K, Merk A, Subramaniam S, Kuriyan J
eLife (2021) 10 [ DOI: doi:10.7554/eLife.73218 Pubmed: 34846302 ]
- Transforming growth factor alpha (5 kDa, Protein from Homo sapiens)
- Epidermal growth factor receptor (134 kDa, Protein from Homo sapiens)
- Full-length human egfr:tgf-alpha complex (Complex from Homo sapiens)