Cryo-EM structure of human nucleosome core particle composed of the Widom 601L DNA sequence
Resolution: 1.89 Å
EM Method: Single-particle
Fitted PDBs: 7vz4
Q-score: 0.724
Takizawa Y, Ho CH, Sato S, Danev R, Kurumizaka H
To Be Published
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Dna (145-mer) (44 kDa, DNA from synthetic construct)
- Human nucleosome core particle composed of the widom 601l dna sequence (Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (145-mer) (44 kDa, DNA from synthetic construct)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of the nucleosome containing Giardia histones
Resolution: 3.57 Å
EM Method: Single-particle
Fitted PDBs: 7d69
Q-score: 0.427
Sato S, Takizawa Y, Hoshikawa F, Dacher M, Tanaka H, Tachiwana H, Kujirai T, Iikura Y, Ho CH, Adachi N, Patwal I, Flaus A, Kurumizaka H
Nucleic Acids Res (2021) 49 pp. 8934-8946 [ DOI: doi:10.1093/nar/gkab644 Pubmed: 34352093 ]
- Histone h2b (14 kDa, Protein from Giardia intestinalis)
- 601l dna (145-mer) (44 kDa, DNA from synthetic construct)
- Histone h3 (16 kDa, Protein from Giardia intestinalis)
- Histone h4 (11 kDa, Protein from Giardia intestinalis)
- Nucleosome (Complex from Giardia intestinalis)
- 601l dna (145-mer) (44 kDa, DNA from synthetic construct)
- Histone h2a (14 kDa, Protein from Giardia intestinalis)
Cryo-EM structure of SET8-nucleosome complex
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 7d1z
Q-score: 0.514
Ho CH, Takizawa Y, Kobayashi W, Arimura Y, Kimura H, Kurumizaka H
Life Sci Alliance (2021) 4 [ Pubmed: 33574035 DOI: doi:10.26508/lsa.202000919 ]
- Dna (145-mer) (44 kDa, DNA from synthetic construct)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Set8-nucleosome complex (230 kDa, Complex from Homo sapiens)
- Isoform 2 of n-lysine methyltransferase kmt5a (39 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (145-mer) (44 kDa, DNA from synthetic construct)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of SET8-CENP-A-nucleosome complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7d20
Q-score: 0.446
Ho CH, Takizawa Y, Kobayashi W, Arimura Y, Kimura H, Kurumizaka H
Life Sci Alliance (2021) 4 [ Pubmed: 33574035 DOI: doi:10.26508/lsa.202000919 ]
- Dna (145-mer) (44 kDa, DNA from synthetic construct)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Isoform 2 of n-lysine methyltransferase kmt5a (39 kDa, Protein from Homo sapiens)
- Histone h3-like centromeric protein a (16 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Set8-cenp-a-nucleosome complex (230 kDa, Complex from Homo sapiens)
- Dna (145-mer) (44 kDa, DNA from synthetic construct)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
H3-CENP-A-H3 tri-nucleosome with the 22 base-pair linker DNA
Resolution: 18.7 Å
EM Method: Single-particle
Fitted PDBs: 6l49
Q-score: 0.071
Takizawa Y, Ho C-H, Tachiwana H, Matsunami H, Kobayashi W, Suzuki M, Arimura Y, Hori T, Fukagawa T, Ohi MD, Wolf M, Kurumizaka H
Structure (2019) [ DOI: doi:10.1016/j.str.2019.10.016 Pubmed: 31711756 ]
H3-CENP-A-H3 tri-nucleosome with the 30 base-pair linker DNA
Takizawa Y, Ho C-H, Tachiwana H, Matsunami H, Kobayashi W, Suzuki M, Arimura Y, Hori T, Fukagawa T, Ohi MD, Wolf M, Kurumizaka H
Structure (2019) [ DOI: doi:10.1016/j.str.2019.10.016 Pubmed: 31711756 ]
H3-H3-H3 tri-nucleosome with the 22 base-pair linker DNA, Class1
Resolution: 12.3 Å
EM Method: Single-particle
Fitted PDBs: 6l4a
Q-score: 0.085
Takizawa Y, Ho C-H, Tachiwana H, Matsunami H, Kobayashi W, Suzuki M, Arimura Y, Hori T, Fukagawa T, Ohi MD, Wolf M, Kurumizaka H
Structure (2019) [ DOI: doi:10.1016/j.str.2019.10.016 Pubmed: 31711756 ]
H3-H3-H3 tri-nucleosome with the 22 base-pair linker DNA, Class2
Takizawa Y, Ho C-H, Tachiwana H, Matsunami H, Kobayashi W, Suzuki M, Arimura Y, Hori T, Fukagawa T, Ohi MD, Wolf M, Kurumizaka H
Structure (2019) [ DOI: doi:10.1016/j.str.2019.10.016 Pubmed: 31711756 ]
H3-H3-H3 tri-nucleosome with the 30 base-pair linker DNA
Takizawa Y, Ho C-H, Tachiwana H, Matsunami H, Kobayashi W, Suzuki M, Arimura Y, Hori T, Fukagawa T, Ohi MD, Wolf M, Kurumizaka H
Structure (2019) [ DOI: doi:10.1016/j.str.2019.10.016 Pubmed: 31711756 ]