Structure of nucleosome complexed with two DEK molecules
Kujirai T, Echigoya K, Kishi Y, Saeki M, Ito T, Kato J, Negishi L, Ogasawara M, Kimura H, Masumoto H, Takizawa Y, Gotoh Y, Kurumizaka H
To Be Published
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Protein dek (43 kDa, Protein from Homo sapiens)
- Dna (193-mer) (59 kDa, DNA from synthetic construct)
- Dek dimer bound to the nucleosome (Complex from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Dna (193-mer) (59 kDa, DNA from synthetic construct)
193 bp Widom601L nucleosome (closed)
Kujirai T, Echigoya K, Kishi Y, Saeki M, Ito T, Kato J, Negishi L, Kimura H, Masumoto H, Takizawa Y, Gotoh Y, Kurumizaka H
Nat Struct Mol Biol (2025) [ Pubmed: 39984731 DOI: doi:10.1038/s41594-025-01493-w ]
- 193 bp widom601l nucleosome (closed) (14 MDa, Complex from Homo sapiens)
193 bp Widom601L nucleosome (middle)
Kujirai T, Echigoya K, Kishi Y, Saeki M, Ito T, Kato J, Negishi L, Kimura H, Masumoto H, Takizawa Y, Gotoh Y, Kurumizaka H
Nat Struct Mol Biol (2025) [ Pubmed: 39984731 DOI: doi:10.1038/s41594-025-01493-w ]
- 193 bp widom601l nucleosome (closed) (14 MDa, Complex from Homo sapiens)
193 bp Widom601L nucleosome (open)
Kujirai T, Echigoya K, Kishi Y, Saeki M, Ito T, Kato J, Negishi L, Kimura H, Masumoto H, Takizawa Y, Gotoh Y, Kurumizaka H
Nat Struct Mol Biol (2025) [ Pubmed: 39984731 DOI: doi:10.1038/s41594-025-01493-w ]
- 193 bp widom601l nucleosome (open) (14 MDa, Complex from Homo sapiens)
Cryo-EM structure of nucleosome in complex with p300 acetyltransferase catalytic core (complex I)
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 7w9v
Q-score: 0.307
Hatazawa S, Liu J, Takizawa Y, Zandian M, Negishi L, Kutateladze TG, Kurumizaka H
iScience (2022) 25 pp. 104563-104563 [ Pubmed: 35754730 DOI: doi:10.1016/j.isci.2022.104563 ]
- Dna (145-mer) (44 kDa, DNA from synthetic construct)
- Histone acetyltransferase p300 (74 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Nucleosome in complex with p300 acetyltransferase catalytic core (complex i) (Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (145-mer) (44 kDa, DNA from synthetic construct)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of nucleosome in complex with p300 acetyltransferase catalytic core (complex II)
Hatazawa S, Liu J, Takizawa Y, Zandian M, Negishi L, Kutateladze TG, Kurumizaka H
iScience (2022) 25 pp. 104563-104563 [ Pubmed: 35754730 DOI: doi:10.1016/j.isci.2022.104563 ]
Cryo-EM structure of nucleosome in complex with p300 acetyltransferase catalytic core (complex III)
Hatazawa S, Liu J, Takizawa Y, Zandian M, Negishi L, Kutateladze TG, Kurumizaka H
iScience (2022) 25 pp. 104563-104563 [ Pubmed: 35754730 DOI: doi:10.1016/j.isci.2022.104563 ]
Cryo-EM structure of nucleosome in complex with p300 acetyltransferase catalytic core (complex IV)
Hatazawa S, Liu J, Takizawa Y, Zandian M, Negishi L, Kutateladze TG, Kurumizaka H
iScience (2022) 25 pp. 104563-104563 [ Pubmed: 35754730 DOI: doi:10.1016/j.isci.2022.104563 ]