Cryo-EM structure of HIV-1 BG505 DS-SOSIP ENV trimer bound to VRC34.01 FAB
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8euu
Q-score: 0.545
Banach BB, Pletnev S, Olia AS, Xu K, Zhang B, Rawi R, Bylund T, Doria-Rose NA, Nguyen TD, Fahad AS, Lee M, Lin BC, Liu T, Louder MK, Madan B, McKee K, O'Dell S, Sastry M, Schon A, Bui N, Shen CH, Wolfe JR, Chuang GY, Mascola JR, Kwong PD, DeKosky BJ
Nat Commun (2023) 14 pp. 7593-7593 [ Pubmed: 37989731 DOI: doi:10.1038/s41467-023-42098-5 ]
- Vrc34.01 fab variable light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Bg505 ds-sosip vrc34.01 fab complex (Complex from Human immunodeficiency virus 1)
- Vrc34.01 fab variable heavy chain (23 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp120 (54 kDa, Protein from Human immunodeficiency virus 1)
Cryo-EM structure of HIV-1 BG505 DS-SOSIP ENV trimer bound to VRC34.01-COMBO1 FAB
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8euv
Q-score: 0.586
Banach BB, Pletnev S, Olia AS, Xu K, Zhang B, Rawi R, Bylund T, Doria-Rose NA, Nguyen TD, Fahad AS, Lee M, Lin BC, Liu T, Louder MK, Madan B, McKee K, O'Dell S, Sastry M, Schon A, Bui N, Shen CH, Wolfe JR, Chuang GY, Mascola JR, Kwong PD, DeKosky BJ
Nat Commun (2023) 14 pp. 7593-7593 [ Pubmed: 37989731 DOI: doi:10.1038/s41467-023-42098-5 ]
- Vrc34.01-combo1 fab variable heavy chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bg505 ds-sosip vrc34.01-combo1 fab complex (Complex from Human immunodeficiency virus 1)
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Vrc34.01-combo1 fab variable light chain (23 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Envelope glycoprotein gp120 (54 kDa, Protein from Human immunodeficiency virus 1)
Cryo-EM structure of HIV-1 BG505 DS-SOSIP ENV trimer bound to VRC34.01-MM28 FAB
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8euw
Q-score: 0.553
Banach BB, Pletnev S, Olia AS, Xu K, Zhang B, Rawi R, Bylund T, Doria-Rose NA, Nguyen TD, Fahad AS, Lee M, Lin BC, Liu T, Louder MK, Madan B, McKee K, O'Dell S, Sastry M, Schon A, Bui N, Shen CH, Wolfe JR, Chuang GY, Mascola JR, Kwong PD, DeKosky BJ
Nat Commun (2023) 14 pp. 7593-7593 [ Pubmed: 37989731 DOI: doi:10.1038/s41467-023-42098-5 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Vrc34.01-mm28 fab variable heavy chain (23 kDa, Protein from Homo sapiens)
- Bg505 ds-sosip vrc34.01-mm28 fab complex (Complex from Human immunodeficiency virus 1)
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Vrc34.01-mm28 fab variable light chain (23 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Envelope glycoprotein gp120 (54 kDa, Protein from Human immunodeficiency virus 1)
Cryo-EM structure of SIVmac239 SOS-2P Env trimer in complex with human bNAb PGT145
Resolution: 4.12 Å
EM Method: Single-particle
Fitted PDBs: 8dvd
Q-score: 0.322
Gorman J, Wang C, Mason RD, Nazzari AF, Welles HC, Zhou T, Bess Jr JW, Bylund T, Lee M, Tsybovsky Y, Verardi R, Wang S, Yang Y, Zhang B, Rawi R, Keele BF, Lifson JD, Liu J, Roederer M, Kwong PD
Nat Struct Mol Biol (2022) 29 pp. 1080-1091 [ DOI: doi:10.1038/s41594-022-00852-1 Pubmed: 36344847 ]
- Sivmac239 sos-2p in complex with pgt145 (Complex from Simian immunodeficiency virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pgt145 heavy (26 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp160 (57 kDa, Protein from Simian immunodeficiency virus)
- Pgt145 light (23 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp160 (16 kDa, Protein from Simian immunodeficiency virus)
- Alpha-d-mannopyranose (180 Da, Ligand)
SIV E660.CR54 SOS-2P Env Trimer with ITS92.02
Resolution: 4.32 Å
EM Method: Single-particle
Fitted PDBs: 8dua
Q-score: 0.249
Gorman J, Wang C, Mason RD, Nazzari AF, Welles HC, Zhou T, Bess Jr JW, Bylund T, Lee M, Tsybovsky Y, Verardi R, Wang S, Yang Y, Zhang B, Rawi R, Keele BF, Lifson JD, Liu J, Roederer M, Kwong PD
Nat Struct Mol Biol (2022) 29 pp. 1080-1091 [ DOI: doi:10.1038/s41594-022-00852-1 Pubmed: 36344847 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Envelope glycoprotein gp41 (16 kDa, Protein from Simian immunodeficiency virus)
- Envelope glycoprotein gp120 (59 kDa, Protein from Simian immunodeficiency virus)
- Siv e660.cr54 sos-2p with its92.02 (Complex from Influenza A virus)
- Its92.02 light chain (23 kDa, Protein from Macaca mulatta)
- Its92.02 heavy chain (24 kDa, Protein from Macaca mulatta)
In-situ structure of SIV trimer
Gorman J, Wang C, Mason RD, Nazzari AF, Welles HC, Zhou T, Bess Jr JW, Bylund T, Lee M, Tsybovsky Y, Verardi R, Wang S, Yang Y, Zhang B, Rawi R, Keele BF, Lifson JD, Liu J, Roederer M, Kwong PD
Nat Struct Mol Biol (2022) 29 pp. 1080-1091 [ DOI: doi:10.1038/s41594-022-00852-1 Pubmed: 36344847 ]
in situ SIVmac239-Env trimers on the surface of AT-2-inactivated virions
Gorman J, Wang C, Mason RD, Nazzari AF, Welles HC, Zhou T, Bess Jr JW, Bylund T, Lee M, Tsybovsky Y, Verardi R, Wang S, Yang Y, Zhang B, Rawi R, Keele BF, Lifson JD, Liu J, Roederer M, Kwong PD
Nat Struct Mol Biol (2022) 29 pp. 1080-1091 [ DOI: doi:10.1038/s41594-022-00852-1 Pubmed: 36344847 ]
in situ SIVmac239-Env trimers on the surface of AT-2-inactivated virions
Gorman J, Wang C, Mason RD, Nazzari AF, Welles HC, Zhou T, Bess Jr JW, Bylund T, Lee M, Tsybovsky Y, Verardi R, Wang S, Yang Y, Zhang B, Rawi R, Keele BF, Lifson JD, Liu J, Roederer M, Kwong PD
Nat Struct Mol Biol (2022) 29 pp. 1080-1091 [ DOI: doi:10.1038/s41594-022-00852-1 Pubmed: 36344847 ]
In-situ structure of SIVmac239-Env trimers with ITS90.03 associated
Gorman J, Wang C, Mason RD, Nazzari AF, Welles HC, Zhou T, Bess Jr JW, Bylund T, Lee M, Tsybovsky Y, Verardi R, Wang S, Yang Y, Zhang B, Rawi R, Keele BF, Lifson JD, Liu J, Roederer M, Kwong PD
Nat Struct Mol Biol (2022) 29 pp. 1080-1091 [ DOI: doi:10.1038/s41594-022-00852-1 Pubmed: 36344847 ]
SIV mac239 SOS-2P K169T Env trimer with bNAb PGT145 and jacalin
Gorman J, Wang C, Mason RD, Nazzari AF, Welles HC, Zhou T, Bess Jr JW, Bylund T, Lee M, Tsybovsky Y, Verardi R, Wang S, Yang Y, Zhang B, Rawi R, Keele BF, Lifson JD, Liu J, Roederer M, Kwong PD
Nat Struct Mol Biol (2022) 29 pp. 1080-1091 [ DOI: doi:10.1038/s41594-022-00852-1 Pubmed: 36344847 ]