Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 8tnl
Q-score: 0.454
Jia M, Zhao H, Morano NC, Lu H, Lui YM, Du H, Becker JE, Yuen KY, Ho DD, Kwong PD, Shapiro L, To KK, Wu X
Nat Commun (2024) 15 pp. 4505-4505 [ DOI: doi:10.1038/s41467-024-48758-4 Pubmed: 38802413 ]
- H7.hk1 neutralizing antibody heavy chain (12 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- H7.hk1 neutralizing antibody heavy chain (12 kDa, Protein from Homo sapiens)
- Hemagglutinin (63 kDa, Protein from Influenza A virus (A/Shanghai/02/2013(H7N9)))
- H7 hemagglutinin from a/shanghai2/2013 h7n9 in complex with a human neutralizing antibody h7.hk1 (Complex from Homo sapiens)
Resolution: 3.69 Å
EM Method: Single-particle
Fitted PDBs: 8toa
Q-score: 0.342
Jia M, Zhao H, Morano NC, Lu H, Lui YM, Du H, Becker JE, Yuen KY, Ho DD, Kwong PD, Shapiro L, To KK, Wu X
Nat Commun (2024) 15 pp. 4505-4505 [ DOI: doi:10.1038/s41467-024-48758-4 Pubmed: 38802413 ]
- Hemagglutinin (63 kDa, Protein from Influenza A virus (A/Shanghai/02/2013(H7N9)))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- H7.hk2 neutralizing antibody heavy chain (13 kDa, Protein from Homo sapiens)
- H7 hemagglutinin from a/shanghai2/2013 h7n9 in complex with a human neutralizing antibody h7.hk1 (Complex from Homo sapiens)
- H7.hk2 neutralizing antibody light chain (12 kDa, Protein from Homo sapiens)
Broadly Neutralizing Antibody 10-40 in complex with prefusion SARS-CoV-2 B.1.351 Spike glycoprotein
Liu L, Iketani S, Guo Y, Reddem ER, Casner RG, Nair MS, Yu J, Chan JF, Wang M, Cerutti G, Li Z, Morano NC, Castagna CD, Corredor L, Chu H, Yuan S, Poon VK, Chan CC, Chen Z, Luo Y, Cunningham M, Chavez A, Yin MT, Perlin DS, Tsuji M, Yuen KY, Kwong PD, Sheng Z, Huang Y, Shapiro L, Ho DD
Sci Transl Med (2022) 14 pp. eabn6859-eabn6859 [ Pubmed: 35438546 DOI: doi:10.1126/scitranslmed.abn6859 ]
Antibody 10-28 in complex with prefusion SARS-CoV-2 B.1.351 Spike glycoprotein
Liu L, Iketani S, Guo Y, Reddem ER, Casner RG, Nair MS, Yu J, Chan JF, Wang M, Cerutti G, Li Z, Morano NC, Castagna CD, Corredor L, Chu H, Yuan S, Poon VK, Chan CC, Chen Z, Luo Y, Cunningham M, Chavez A, Yin MT, Perlin DS, Tsuji M, Yuen KY, Kwong PD, Sheng Z, Huang Y, Shapiro L, Ho DD
Sci Transl Med (2022) 14 pp. eabn6859-eabn6859 [ Pubmed: 35438546 DOI: doi:10.1126/scitranslmed.abn6859 ]
- Antibody 10-28 in complex with prefusion sars-cov-2 b.1.351 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Antibody 10-28 light (Protein from Homo sapiens)
- Antibody 10-28 heavy (Protein from Homo sapiens)
- Spike glycoprotein (Protein from Severe acute respiratory syndrome coronavirus 2)
Antibody 11-11 in complex with prefusion SARS-CoV-2 B.1.351 Spike glycoprotein
Liu L, Iketani S, Guo Y, Reddem ER, Casner RG, Nair MS, Yu J, Chan JF, Wang M, Cerutti G, Li Z, Morano NC, Castagna CD, Corredor L, Chu H, Yuan S, Poon VK, Chan CC, Chen Z, Luo Y, Cunningham M, Chavez A, Yin MT, Perlin DS, Tsuji M, Yuen KY, Kwong PD, Sheng Z, Huang Y, Shapiro L, Ho DD
Sci Transl Med (2022) 14 pp. eabn6859-eabn6859 [ Pubmed: 35438546 DOI: doi:10.1126/scitranslmed.abn6859 ]
- Antibody 11-11 light chain (Protein from Homo sapiens)
- Antibody 11-11 heavy chain (Protein from Homo sapiens)
- Spike glycoprotein (Protein from Severe acute respiratory syndrome coronavirus 2)
- Antibody 11-11 in complex with prefusion sars-cov-2 b.1.351 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
CryoEM structure of neutralizing nanobody Nb30 in complex with SARS-CoV2 spike
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 7my2
Q-score: 0.467
Xu J, Xu K, Jung S, Conte A, Lieberman J, Muecksch F, Lorenzi JCC, Park S, Schmidt F, Wang Z, Huang Y, Luo Y, Nair MS, Wang P, Schulz JE, Tessarollo L, Bylund T, Chuang GY, Olia AS, Stephens T, Teng IT, Tsybovsky Y, Zhou T, Munster V, Ho DD, Hatziioannou T, Bieniasz PD, Nussenzweig MC, Kwong PD, Casellas R
Nature (2021) 595 pp. 278-282 [ DOI: doi:10.1038/s41586-021-03676-z Pubmed: 34098567 ]
- Nanobody nb30 (14 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov2 spike in complex with nanobody nb30 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanobody nb30 (Complex from Mus musculus)
- Sars-cov2 spike (Complex)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
CryoEM structure of neutralizing nanobody Nb12 in complex with SARS-CoV2 spike
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7my3
Q-score: 0.491
Xu J, Xu K, Jung S, Conte A, Lieberman J, Muecksch F, Lorenzi JCC, Park S, Schmidt F, Wang Z, Huang Y, Luo Y, Nair MS, Wang P, Schulz JE, Tessarollo L, Bylund T, Chuang GY, Olia AS, Stephens T, Teng IT, Tsybovsky Y, Zhou T, Munster V, Ho DD, Hatziioannou T, Bieniasz PD, Nussenzweig MC, Kwong PD, Casellas R
Nature (2021) 595 pp. 278-282 [ DOI: doi:10.1038/s41586-021-03676-z Pubmed: 34098567 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nanobody nb12 (13 kDa, Protein from Mus musculus)
- Nanobody nb12 (Complex from Mus musculus)
- Sars-cov2 spike in complex with nanobody nb12 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov2 spike (Complex)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-4
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 6xey
Q-score: 0.454
Liu L, Wang P, Nair MS, Yu J, Rapp M, Wang Q, Luo Y, Chan JF, Sahi V, Figueroa A, Guo XV, Cerutti G, Bimela J, Gorman J, Zhou T, Chen Z, Yuen KY, Kwong PD, Sodroski JG, Yin MT, Sheng Z, Huang Y, Shapiro L, Ho DD
Nature (2020) 584 pp. 450-456 [ Pubmed: 32698192 DOI: doi:10.1038/s41586-020-2571-7 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 spike glycoprotein bound to fab 2-4 (515 MDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-4 heavy chain (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-4 light chain (11 kDa, Protein from Homo sapiens)