Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA(UGA-TL)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8ffy
Q-score: 0.415
Kuhle B, Hirschi M, Doerfel LK, Lander GC, Schimmel P
Nat Commun (2023) 14 pp. 4794-4794 [ DOI: doi:10.1038/s41467-023-40354-2 Pubmed: 37558671 ]
- 5'-o-(n-(l-seryl)-sulfamoyl)adenosine (433 Da, Ligand)
- Serine--trna ligase, mitochondrial (58 kDa, Protein from Homo sapiens)
- Human mt-serrs in complex with mt-trna(uga-tl) and sersa (Complex from Homo sapiens)
- Mt-trna(uga-tl) (21 kDa, RNA from Homo sapiens)
Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA (GCU)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7u2a
Q-score: 0.328
Kuhle B, Hirschi M, Doerfel LK, Lander GC, Schimmel P
Nat Commun (2022) 13 pp. 5100-5100 [ Pubmed: 36042193 DOI: doi:10.1038/s41467-022-32544-1 ]
- 5'-o-(n-(l-seryl)-sulfamoyl)adenosine (433 Da, Ligand)
- Serine--trna ligase, mitochondrial (58 kDa, Protein from Homo sapiens)
- Rna (38-mer) (12 kDa, RNA from Homo sapiens)
- Human mtserrs in complex with mt-trna(gcu) and sersa (Complex from Homo sapiens)
Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA(GCU-TL)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7u2b
Q-score: 0.396
Kuhle B, Hirschi M, Doerfel LK, Lander GC, Schimmel P
Nat Commun (2022) 13 pp. 5100-5100 [ Pubmed: 36042193 DOI: doi:10.1038/s41467-022-32544-1 ]
- Rna (53-mer) (16 kDa, RNA from Homo sapiens)
- Serine--trna ligase, mitochondrial (58 kDa, Protein from Homo sapiens)
- Human mt-serrs in complex with mt-trna(gcu-tl) and sersa (Complex from Homo sapiens)
- 5'-o-(n-(l-seryl)-sulfamoyl)adenosine (433 Da, Ligand)
Cryo-EM structure of Ephydatia fluviatilis PiwiA-piRNA complex
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7kx7
Q-score: 0.457
Anzelon TA, Chowdhury S, Hughes SM, Xiao Y, Lander GC, MacRae IJ
Nature (2021) 597 pp. 285-289 [ Pubmed: 34471284 DOI: doi:10.1038/s41586-021-03856-x ]
- Rna (5'-r(p*up*cp*up*cp*ap*gp*(omc))-3') (8 kDa, RNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Piwi-a (88 kDa, Protein from Ephydatia fluviatilis)
- Pirna (Complex from synthetic construct)
- Complex between efpiwi and pirna (83 kDa, Complex)
- Piwi-a (Complex from Ephydatia fluviatilis)
Cryo-EM structure of Ephydatia fluviatilis PiwiA-piRNA-target complex
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7kx9
Q-score: 0.461
Anzelon TA, Chowdhury S, Hughes SM, Xiao Y, Lander GC, MacRae IJ
Nature (2021) 597 pp. 285-289 [ Pubmed: 34471284 DOI: doi:10.1038/s41586-021-03856-x ]
- Magnesium ion (24 Da, Ligand)
- Pirna-target (Complex from synthetic construct)
- Rna (5'-r(p*up*gp*up*cp*cp*ap*ap*cp*up*cp*ap*ap*gp*ap*gp*a)-3') (5 kDa, RNA from synthetic construct)
- Rna (5'-r(p*up*cp*up*cp*up*up*gp*ap*gp*up*up*gp*gp*ap*cp*ap*ap*ap*up*gp*gp*cp*ap*(omg))-3') (7 kDa, RNA from synthetic construct)
- Piwi-a (88 kDa, Protein from Ephydatia fluviatilis)
- Efpiwi-pirna-target complex (94 kDa, Complex)
- Piwi-a (Complex from Ephydatia fluviatilis)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6w1x
Q-score: 0.36
Hirschi M, Lu WT, Santiago-Frangos A, Wilkinson R, Golden SM, Davidson AR, Lander GC, Wiedenheft B
Nat Commun (2020) 11 pp. 2730-2730 [ DOI: doi:10.1038/s41467-020-16512-1 Pubmed: 32483187 ]
- Anti-crispr acrif9 (7 kDa, Protein from Proteus penneri)
- Anti-crispr acrif9 bound to the type i-f crrna-guided crispr surveillance complex (Complex)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa)
- Rna (60-mer) (19 kDa, RNA from Pseudomonas aeruginosa)
- Type i-f crispr-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa)
- Crispr-associated protein csy3 (39 kDa, Protein from Pseudomonas aeruginosa)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa)
- Type i-f crrna-guided crispr surveillance complex (Complex from Pseudomonas aeruginosa)
- Anti-crispr acrif9 (Complex from Proteus penneri)
Structure of double-stranded target DNA engaged Csy complex from Pseudomonas aeruginosa (PA-14)
Rollins MF, Chowdhury S, Carter J, Golden SM, Miettinen HM, Santiago-Frangos A, Faith D, Lawrence MC, Wiedenheft B, Lander GC
Mol Cell (2019) [ DOI: doi:10.1016/j.molcel.2019.02.001 ]
- Double-stranded target dna engaged csy complex from pseudomonas aeruginosa (pa-14) (360 kDa, Complex from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr target dna (44-mer) (13 kDa, DNA from Pseudomonas aeruginosa UCBPP-PA14)
- Crispr rna (60-mer) (19 kDa, RNA from Pseudomonas aeruginosa UCBPP-PA14)
- Non-complementary r-loop dna strand (10 kDa, DNA from Pseudomonas aeruginosa UCBPP-PA14)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
Chowdhury S, Carter J, Rollins MF, Golden SM, Jackson RN, Hoffmann C, Nosaka L, Bondy-Denomy J, Maxwell KL, Davidson AR, Fischer ER, Lander GC, Wiedenheft B
Cell (2017) 169 pp. 47-57.e11 [ DOI: doi:10.1016/j.cell.2017.03.012 Pubmed: 28340349 ]
- Anti-crispr protein 30 (10 kDa, Protein from Pseudomonas phage D3112)
- Crispr-associated protein csy2 (36 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr rna (60-mer) (19 kDa, RNA from Pseudomonas aeruginosa UCBPP-PA14)
- Anti-crisprs acrf1 and acrf2 bound p. aeruginosa crrna-guided crispr surveillance(csy)complex. (450 kDa, Complex from Pseudomonas aeruginosa UCBPP-PA14)
- Crispr-associated protein csy3 (37 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas aeruginosa (strain UCBPP-PA14))
- Anti-crispr protein acr30-35 (8 kDa, Protein from Pseudomonas phage JBD30)
Structures of the RNA-guided surveillance complex from a bacterial immune system
Wiedenheft B, Lander GC, Zhou K, Jore MM, Brouns SJ, van der Oost J, Doudna JA, Nogales E
Nature (2011) 477 pp. 486-489 [ Pubmed: 21938068 DOI: doi:10.1038/nature10402 ]
- Rna (9 kDa, RNA from unidentified)
- E. coli cascade complex bound to complementary rna target (415 kDa, Sample)
- Cascade (405 kDa, Cellular component from Escherichia coli)