Misson Mindrebo LE, Mindrebo JT, Tran Q, Wilkinson MC, Smith JM, Verma M, Casewell NR, Lander GC, Jardine JG
Toxins (2024) 16 [ DOI: doi:10.3390/toxins16080361 Pubmed: 39195771 ]
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Ecarin in complex with neutralizing antibody h11 (Complex from Echis pyramidum leakeyi)
- Endogenous peptide (613 Da, Protein from Homo sapiens)
- H11 fab heavy chain (23 kDa, Protein from Homo sapiens)
- Zinc metalloproteinase-disintegrin-like ecarin (47 kDa, Protein from Echis carinatus)
- H11 fab light chain (22 kDa, Protein from Homo sapiens)
Human Mitochondrial LONP1 Degrading Casein, ATP-bound closed form
Resolution: 3.31 Å
EM Method: Single-particle
Fitted PDBs: 9cc0
Q-score: 0.501
bioRxiv (2024) [ DOI: doi:10.1101/2024.06.24.600538 Pubmed: 38979310 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Lon protease homolog, mitochondrial (97 kDa, Protein from Homo sapiens)
- Bound substrate segment undergoing translocation and subsequent degradation (1 kDa, Protein from Bos taurus)
- Lonp1 degrading casein (583 kDa, Complex from Homo sapiens)
Human Mitochondrial LONP1 Stall State + casein
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 9cc3
Q-score: 0.489
bioRxiv (2024) [ DOI: doi:10.1101/2024.06.24.600538 Pubmed: 38979310 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Lon protease homolog, mitochondrial (97 kDa, Protein from Homo sapiens)
- Endogenous co-purified substrate modeled as unknown residues (2 kDa, Protein from Escherichia coli 'BL21-Gold(DE3)pLysS AG')
- Lonp1 closed state in complex with casein (583 kDa, Complex from Homo sapiens)
Cryo-EM structure of LKB1-STRADalpha-MO25alpha heterocomplex
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 8vsu
Q-score: 0.575
Chan LM, Courteau BJ, Maker A, Wu M, Basanta B, Mehmood H, Bulkley D, Joyce D, Lee BC, Mick S, Czarnik C, Gulati S, Lander GC, Verba KA
J Struct Biol (2024) 216 pp. 108108-108108 [ DOI: doi:10.1016/j.jsb.2024.108108 Pubmed: 38944401 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Serine/threonine-protein kinase stk11 (50 kDa, Protein from Homo sapiens)
- Heterotrimeric complex of serine/threonine kinase lkb1 with psuedokinase strada and scaffolding mo25a (140 kDa, Complex from Homo sapiens)
- Calcium-binding protein 39 (41 kDa, Protein from Homo sapiens)
- Isoform 3 of ste20-related kinase adapter protein alpha (47 kDa, Protein from Homo sapiens)
Human transthyretin covalently modified with A2-derived stilbene in the canonical conformation
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8ve1
Q-score: 0.607
Basanta B, Nugroho K, Yan NL, Kline GM, Powers ET, Tsai FJ, Wu M, Hansel-Harris A, Chen JS, Forli S, Kelly JW, Lander GC
Nat Struct Mol Biol (2025) [ Pubmed: 39843982 DOI: doi:10.1038/s41594-024-01472-7 ]
- 3-(dimethylamino)-5-[(e)-2-(4-hydroxy-3,5-dimethylphenyl)ethenyl]benzoic acid (311 Da, Ligand)
- Transthyretin (13 kDa, Protein from Homo sapiens)
- Transthyretin (56 kDa, Complex from Homo sapiens)
- Water (18 Da, Ligand)
(Biarylamine-FT2-WT)1(C10A)3-human transthyretin in the compressed conformation
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8ve5
Q-score: 0.489
Basanta B, Nugroho K, Yan NL, Kline GM, Powers ET, Tsai FJ, Wu M, Hansel-Harris A, Chen JS, Forli S, Kelly JW, Lander GC
Nat Struct Mol Biol (2025) [ Pubmed: 39843982 DOI: doi:10.1038/s41594-024-01472-7 ]
- Transthyretin (15 kDa, Protein from Homo sapiens)
- 2-[(3,5-dichloro-4-trioxidanylphenyl)amino]benzoic acid (330 Da, Ligand)
- Transthyretin (57 kDa, Complex from Homo sapiens)
(Biarylamine-FT2-WT)1(C10A)3-human transthyretin in the frayed conformation
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8ve6
Q-score: 0.447
Basanta B, Nugroho K, Yan NL, Kline GM, Powers ET, Tsai FJ, Wu M, Hansel-Harris A, Chen JS, Forli S, Kelly JW, Lander GC
Nat Struct Mol Biol (2025) [ Pubmed: 39843982 DOI: doi:10.1038/s41594-024-01472-7 ]
- Transthyretin (15 kDa, Protein from Homo sapiens)
- 2-[(3,5-dichloro-4-trioxidanylphenyl)amino]benzoic acid (330 Da, Ligand)
- Transthyretin (57 kDa, Complex from Homo sapiens)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8t42
Q-score: 0.395
Mahalingan KK, Grotjahn DA, Li Y, Lander GC, Zehr EA, Roll-Mecak A
Nat Chem Biol (2024) 20 pp. 1493-1504 [ DOI: doi:10.1038/s41589-024-01599-0 Pubmed: 38658656 ]
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Homo sapiens)
- Tubulin alpha-1b chain (50 kDa, Protein from Homo sapiens)
- Ttll6 bound to unmodified human microtubules (300 kDa, Complex)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin polyglutamylase ttll6 (59 kDa, Protein from Mus musculus)
- Tubulin alpha-1b chain, tubulin betai chain (Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Tubulin polyglutamylase ttll6 (Complex from Mus musculus)
S. cerevisiae Pex1/Pex6 with 1 mM ATP
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 8u0v
Q-score: 0.293
Ali BA, Judy RM, Chowdhury S, Jacobsen NK, Castanzo DT, Carr KL, Richardson CD, Lander GC, Martin A, Gardner BM
J Biol Chem (2023) 300 pp. 105504-105504 [ Pubmed: 38036174 DOI: doi:10.1016/j.jbc.2023.105504 ]
- Pex1/pex6 aaa-atpase (637 kDa, Complex from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Peroxisomal atpase pex1 (118 kDa, Protein from Saccharomyces cerevisiae)
- Peroxisomal atpase pex6 (117 kDa, Protein from Saccharomyces cerevisiae)
Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA(UGA-TL)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8ffy
Q-score: 0.415
Kuhle B, Hirschi M, Doerfel LK, Lander GC, Schimmel P
Nat Commun (2023) 14 pp. 4794-4794 [ DOI: doi:10.1038/s41467-023-40354-2 Pubmed: 37558671 ]
- Serine--trna ligase, mitochondrial (58 kDa, Protein from Homo sapiens)
- Mt-trna(uga-tl) (21 kDa, RNA from Homo sapiens)
- Human mt-serrs in complex with mt-trna(uga-tl) and sersa (Complex from Homo sapiens)
- 5'-o-(n-(l-seryl)-sulfamoyl)adenosine (433 Da, Ligand)