BJOX2000.664 trimer in complex with Fab fragment of broadly neutralizing HIV antibody PGT145
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 8jtd
Q-score: 0.211
Hodge EA, Chatterjee A, Chen C, Naika GS, Laohajaratsang M, Mangala Prasad V, Lee KK
Npj Viruses (2023) 1 pp. 2-2 [ Pubmed: 38665238 DOI: doi:10.1038/s44298-023-00002-4 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pgt145 antibody fragment, heavy chain (28 kDa, Protein from Homo sapiens)
- Gp41 protein of hiv envelope trimer (17 kDa, Protein from Human immunodeficiency virus 1)
- Bjox2000.664 trimer in complex with broadly neutralizing hiv antibody pgt145 (Complex from Human immunodeficiency virus 1)
- Gp120 protein of hiv envelope trimer (54 kDa, Protein from Human immunodeficiency virus 1)
- Pgt145 antibody fragment, light chain (23 kDa, Protein from Homo sapiens)
CNE55.664 trimer in complex with broadly neutralizing HIV antibody PGT145
Resolution: 5.14 Å
EM Method: Single-particle
Fitted PDBs: 8jtm
Q-score: 0.166
Hodge EA, Chatterjee A, Chen C, Naika GS, Laohajaratsang M, Mangala Prasad V, Lee KK
Npj Viruses (2023) 1 pp. 2-2 [ Pubmed: 38665238 DOI: doi:10.1038/s44298-023-00002-4 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Gp120 protein of hiv envelope trimer (54 kDa, Protein from Human immunodeficiency virus 1)
- Cne55.664 trimer in complex with broadly neutralizing hiv antibody pgt145 (Complex from Human immunodeficiency virus 1)
- Pgt145 antibody fragment, heavy chain (28 kDa, Protein from Homo sapiens)
- Gp41 protein of hiv envelope trimer (17 kDa, Protein from Human immunodeficiency virus 1)
- Pgt145 antibody fragment, light chain (23 kDa, Protein from Homo sapiens)
Sub-tomogram averaged structure of HIV-1 Envelope protein in native membrane
Resolution: 9.1 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7ska
Q-score: 0.067
Mangala Prasad V, Leaman DP, Lovendahl KN, Croft JT, Benhaim MA, Hodge EA, Zwick MB, Lee KK
Cell (2022) 185 pp. 641-653.e17 [ DOI: doi:10.1016/j.cell.2022.01.013 Pubmed: 35123651 ]
- Human immunodeficiency virus 1 (430 kDa, Virus from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Envelope glycoprotein gp41 (16 kDa, Protein from Human immunodeficiency virus 1)
- Alpha-l-fucopyranose (164 Da, Ligand)
- Envelope glycoprotein gp120 (52 kDa, Protein from Human immunodeficiency virus 1)
Asymmetric reconstruction of membrane-bound HIV Env from virus-like particles
Mangala Prasad V, Leaman DP, Lovendahl KN, Croft JT, Benhaim MA, Hodge EA, Zwick MB, Lee KK
Cell (2022) 185 pp. 641-653.e17 [ DOI: doi:10.1016/j.cell.2022.01.013 Pubmed: 35123651 ]
Sub-tomogram averaged map of HIV-Env with Gag layer from immature VLPs
Mangala Prasad V, Leaman DP, Lovendahl KN, Croft JT, Benhaim MA, Hodge EA, Zwick MB, Lee KK
Cell (2022) 185 pp. 641-653.e17 [ DOI: doi:10.1016/j.cell.2022.01.013 Pubmed: 35123651 ]
- Human immunodeficiency virus 1 (400 kDa, Virus from Human immunodeficiency virus 1)