Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ucg
Q-score: 0.411
Barnes CO, Schoofs T, Gnanapragasam PNP, Golijanin J, Huey-Tubman KE, Gruell H, Schommers P, Suh-Toma N, Lee YE, Cetrulo Lorenzi JC, Piechocka-Trocha A, Scheid JF, West Jr AP, Walker BD, Seaman MS, Klein F, Nussenzweig MC, Bjorkman PJ
Sci Adv (2022) 8 pp. eabp8155-eabp8155 [ Pubmed: 35960796 DOI: doi:10.1126/sciadv.abp8155 ]
- 10-1074 fab heavy chain (26 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Complex of du422 sosip trimer bound to 10-1074 and bg24 fab fragments (650 kDa, Complex from Homo sapiens)
- 10-1074 light chain (23 kDa, Protein from Homo sapiens)
- Bg24 light chain (21 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Bg24 cdrh2-v2 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp160 (56 kDa, Protein from Human immunodeficiency virus 1)
Structure of the SARS-CoV-2 S 6P trimer in complex with neutralizing antibody C118 (State 1)
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 7rkv
Q-score: 0.3
Jette CA, Cohen AA, Gnanapragasam PNP, Muecksch F, Lee YE, Huey-Tubman KE, Schmidt F, Hatziioannou T, Bieniasz PD, Nussenzweig MC, West Jr AP, Keeffe JR, Bjorkman PJ, Barnes CO
Cell Rep (2021) 36 pp. 109760-109760 [ Pubmed: 34534459 DOI: doi:10.1016/j.celrep.2021.109760 ]
- C118 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Ternary complex of c118 fabs bound to the stabilized sars-cov-2 spike glycoprotein (720 kDa, Complex from Homo sapiens)
- C118 fab light chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of the SARS-CoV-2 S 6P trimer in complex with neutralizing antibody C118 (State 2)
Jette CA, Cohen AA, Gnanapragasam PNP, Muecksch F, Lee YE, Huey-Tubman KE, Schmidt F, Hatziioannou T, Bieniasz PD, Nussenzweig MC, West Jr AP, Keeffe JR, Bjorkman PJ, Barnes CO
Cell Rep (2021) 36 pp. 109760-109760 [ Pubmed: 34534459 DOI: doi:10.1016/j.celrep.2021.109760 ]
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7k8s
Q-score: 0.409
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- Ternary complex of sars-cov-2 s 2p glycoprotein with fab fragments of the human neutralizing antibody c002 (700 kDa, Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Neutralizing antibody c002 (Complex from Homo sapiens)
- C002 fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- C002 fab heavy chain (25 kDa, Protein from Homo sapiens)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7k8t
Q-score: 0.407
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- Ternary complex of sars-cov-2 s 2p glycoprotein with fab fragments of the human neutralizing antibody c002 (700 kDa, Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Neutralizing antibody c002 (Complex from Homo sapiens)
- C002 fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- C002 fab heavy chain (25 kDa, Protein from Homo sapiens)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7k8u
Q-score: 0.38
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- C104 fab light chain (23 kDa, Protein from Homo sapiens)
- Neutralizing antibody c104 (Complex from Homo sapiens)
- C104 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ternary complex of sars-cov-2 s 2p glycoprotein with fab fragments of the human neutralizing antibody c104 (700 kDa, Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7k8v
Q-score: 0.262
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- C110 fab light chain (23 kDa, Protein from Homo sapiens)
- Ternary complex of sars-cov-2 s 2p trimer with human neutralizing antibody fab fragment c110 (720 kDa, Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C110 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Neutralizing antibody fab fragment c110 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7k8w
Q-score: 0.344
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- Neutralizing antibody c119 (Complex from Homo sapiens)
- Ternary complex of sars-cov-2 s 2p glycoprotein with fab fragments of the human neutralizing antibody c119 (700 kDa, Complex)
- C119 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C119 fab light chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7k8x
Q-score: 0.29
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- Ternary complex of sars-cov-2 s 2p trimer with human neutralizing antibody fab fragment c121 (Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C121 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Neutralizing antibody fab fragment c121 (Complex from Homo sapiens)
- C121 fab light chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7k8y
Q-score: 0.238
Barnes CO, Jette CA, Abernathy ME, Dam KA, Esswein SR, Gristick HB, Malyutin AG, Sharaf NG, Huey-Tubman KE, Lee YE, Robbiani DF, Nussenzweig MC, West Jr AP, Bjorkman PJ
Nature (2020) 588 pp. 682-687 [ Pubmed: 33045718 DOI: doi:10.1038/s41586-020-2852-1 ]
- Ternary complex of sars-cov-2 s 2p trimer with human neutralizing antibody fab fragment c121 (state 2) (720 kDa, Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- C121 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Neutralizing antibody fab fragment c121 (Complex from Homo sapiens)
- C121 fab light chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s 2p glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)