Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7lhg
Q-score: 0.357
Du M, Yuan Z, Werneburg GT, Henderson NS, Chauhan H, Kovach A, Zhao G, Johl J, Li H, Thanassi DG
Nat Commun (2021) 12 pp. 5207-5207 [ Pubmed: 34471127 DOI: doi:10.1038/s41467-021-25522-6 ]
- P fimbria tip g-adhesin papg-ii (37 kDa, Protein from Escherichia coli)
- P fimbrial usher protein papc (88 kDa, Protein from Escherichia coli)
- Chaperone protein papd (26 kDa, Protein from Escherichia coli)
- Fimbrial adapter papk (18 kDa, Protein from Escherichia coli)
- Papcdkg (Complex from Escherichia coli)
Resolution: 7.2 Å
EM Method: Single-particle
Fitted PDBs: 7lhh
Q-score: 0.171
Du M, Yuan Z, Werneburg GT, Henderson NS, Chauhan H, Kovach A, Zhao G, Johl J, Li H, Thanassi DG
Nat Commun (2021) 12 pp. 5207-5207 [ Pubmed: 34471127 DOI: doi:10.1038/s41467-021-25522-6 ]
- Chaperone protein papd (24 kDa, Protein from Escherichia coli)
- P fimbria tip g-adhesin papg-ii (37 kDa, Protein from Escherichia coli)
- P fimbrial usher protein papc (88 kDa, Protein from Escherichia coli)
- Fimbrial adapter papk (18 kDa, Protein from Escherichia coli)
- Papcdkg (Complex from Escherichia coli)
Cryo-EM map of E. coli P pilus tip assembly intermediate PapC-PapD-PapK-PapF-PapG
Resolution: 7.6 Å
EM Method: Single-particle
Fitted PDBs: 7lhi
Q-score: 0.099
Du M, Yuan Z, Werneburg GT, Henderson NS, Chauhan H, Kovach A, Zhao G, Johl J, Li H, Thanassi DG
Nat Commun (2021) 12 pp. 5207-5207 [ Pubmed: 34471127 DOI: doi:10.1038/s41467-021-25522-6 ]
- P fimbria tip g-adhesin papg-ii (37 kDa, Protein from Escherichia coli)
- Papcdkfg (Complex from Escherichia coli)
- P fimbrial usher protein papc (88 kDa, Protein from Escherichia coli)
- Chaperone protein papd (24 kDa, Protein from Escherichia coli)
- Fimbrial adapter papk (18 kDa, Protein from Escherichia coli)
- Fimbrial protein (17 kDa, Protein from Escherichia coli)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6u8y
Q-score: 0.414
Yu H, Haja DK, Schut GJ, Wu CH, Meng X, Zhao G, Li H, Adams MWW
Nat Commun (2020) 11 pp. 5953-5953 [ DOI: doi:10.1038/s41467-020-19697-7 Pubmed: 33230146 ]
- Respiratory membrane complex (Complex from Pyrococcus furiosus)
- Monovalent cation/h+ antiporter subunit g (13 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit b (22 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit (33 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit f (9 kDa, Protein from Pyrococcus furiosus COM1)
- Iron/sulfur cluster (351 Da, Ligand)
- Nadh dehydrogenase subunit m (67 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit c (20 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit i (24 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit d (44 kDa, Protein from Pyrococcus furiosus COM1)
- Duf4040 domain-containing protein (10 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit b (25 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit n (53 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit e (19 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit c (12 kDa, Protein from Pyrococcus furiosus COM1)
Structure of Ctf4 trimer in complex with three CMG helicases
Resolution: 7.0 Å
EM Method: Single-particle
Fitted PDBs: 6pto
Q-score: 0.087
Yuan Z, Georgescu R, Santos RLA, Zhang D, Bai L, Yao NY, Zhao G, O'Donnell ME, Li H
eLife (2019) 8 [ Pubmed: 31589141 DOI: doi:10.7554/eLife.47405 ]
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae)
- Minichromosome maintenance protein 5 (86 kDa, Protein from Saccharomyces cerevisiae)
- Cell division control protein 45 (74 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication complex gins protein psf1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Cmg-cmg-cmg-ctf4 (Complex from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm3 (107 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication complex gins protein sld5 (33 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication complex gins protein psf3 (21 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication complex gins protein psf2 (25 kDa, Protein from Saccharomyces cerevisiae)
- Dna polymerase alpha-binding protein (104 kDa, Protein from Saccharomyces cerevisiae)
Yuan Z, Georgescu R, Santos RLA, Zhang D, Bai L, Yao NY, Zhao G, O'Donnell ME, Li H
eLife (2019) 8 [ Pubmed: 31589141 DOI: doi:10.7554/eLife.47405 ]
Cryo-EM structure of S. cerevisiae Drs2p-Cdc50p in the PI4P-activated form
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6psx
Q-score: 0.383
Bai L, Kovach A, You Q, Hsu HC, Zhao G, Li H
Nat Commun (2019) 10 pp. 4142-4142 [ DOI: doi:10.1038/s41467-019-12191-9 Pubmed: 31515475 ]
- Drs2p-cdc50p complex (Complex from Saccharomyces cerevisiae W303)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cell division control protein 50 (45 kDa, Protein from Saccharomyces cerevisiae W303)
- Probable phospholipid-transporting atpase drs2 (153 kDa, Protein from Saccharomyces cerevisiae W303)
Cryo-EM structure of S. cerevisiae Drs2p-Cdc50p in the autoinhibited apo form
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6psy
Q-score: 0.506
Bai L, Kovach A, You Q, Hsu HC, Zhao G, Li H
Nat Commun (2019) 10 pp. 4142-4142 [ DOI: doi:10.1038/s41467-019-12191-9 Pubmed: 31515475 ]
- Drs2p-cdc50p complex (Complex from Saccharomyces cerevisiae W303)
- Probable phospholipid-transporting atpase drs2 (153 kDa, Protein from Saccharomyces cerevisiae W303)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cell division control protein 50 (45 kDa, Protein from Saccharomyces cerevisiae W303)
Handover mechanism of the growing pilus by the bacterial outer membrane usher FimD
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6e14
Q-score: 0.315
Du M, Yuan Z, Yu H, Henderson N, Sarowar S, Zhao G, Werneburg GT, Thanassi DG, Li H
Nature (2018) 562 pp. 444-447 [ DOI: doi:10.1038/s41586-018-0587-z Pubmed: 30283140 ]
- Fimbrial biogenesis outer membrane usher protein (96 kDa, Protein from Escherichia coli)
- Protein fimf (16 kDa, Protein from Escherichia coli)
- Chaperone protein fimc (26 kDa, Protein from Escherichia coli)
- Type 1 fimbrin d-mannose specific adhesin (31 kDa, Protein from Escherichia coli)
- Fimdcfgh tip complex (180 kDa, Complex from Escherichia coli)
- Protein fimg (16 kDa, Protein from Escherichia coli)
Handover mechanism of the growing pilus by the bacterial outer membrane usher FimD
Resolution: 5.1 Å
EM Method: Single-particle
Fitted PDBs: 6e15
Q-score: 0.232
Du M, Yuan Z, Yu H, Henderson N, Sarowar S, Zhao G, Werneburg GT, Thanassi DG, Li H
Nature (2018) 562 pp. 444-447 [ DOI: doi:10.1038/s41586-018-0587-z Pubmed: 30283140 ]
- Fimbrial biogenesis outer membrane usher protein (96 kDa, Protein from Escherichia coli)
- Chaperone protein fimc (26 kDa, Protein from Escherichia coli)
- Protein fimf (16 kDa, Protein from Escherichia coli)
- Type 1 fimbrin d-mannose specific adhesin (31 kDa, Protein from Escherichia coli)
- Fimdcfgh tip complex (180 kDa, Complex from Escherichia coli)
- Protein fimg (16 kDa, Protein from Escherichia coli)