Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6u8y
Q-score: 0.414
Yu H, Haja DK, Schut GJ, Wu CH, Meng X, Zhao G, Li H, Adams MWW
Nat Commun (2020) 11 pp. 5953-5953 [ DOI: doi:10.1038/s41467-020-19697-7 Pubmed: 33230146 ]
- Monovalent cation/h+ antiporter subunit b (25 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit d (44 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit c (12 kDa, Protein from Pyrococcus furiosus COM1)
- Duf4040 domain-containing protein (10 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit i (24 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit b (22 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit c (20 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit (33 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit m (67 kDa, Protein from Pyrococcus furiosus COM1)
- Iron/sulfur cluster (351 Da, Ligand)
- Monovalent cation/h+ antiporter subunit f (9 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit e (19 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit g (13 kDa, Protein from Pyrococcus furiosus COM1)
- Respiratory membrane complex (Complex from Pyrococcus furiosus)
- Nadh dehydrogenase subunit n (53 kDa, Protein from Pyrococcus furiosus COM1)
Mtb ClpB in complex with ATPgammaS and casein, Conformer 1
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6dju
Q-score: 0.401
Yu H, Lupoli TJ, Kovach A, Meng X, Zhao G, Nathan CF, Li H
PNAS (2018) 115 pp. E9560-E9569 [ Pubmed: 30257943 DOI: doi:10.1073/pnas.1810648115 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chaperone protein clpb (92 kDa, Protein from Mycobacterium tuberculosis)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Casein polyalanine model (1 kDa, Protein from Bos taurus)
- Mtb clpb in complex with atpgammas and casein (Complex from Mycobacterium tuberculosis)
Mtb ClpB in complex with ATPgammaS and casein, Conformer 2
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6djv
Q-score: 0.42
Yu H, Lupoli TJ, Kovach A, Meng X, Zhao G, Nathan CF, Li H
PNAS (2018) 115 pp. E9560-E9569 [ Pubmed: 30257943 DOI: doi:10.1073/pnas.1810648115 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chaperone protein clpb (92 kDa, Protein from Mycobacterium tuberculosis)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Casein polyalanine model (1 kDa, Protein from Bos taurus)
- Mtb clpb in complex with atpgammas and casein (Complex from Mycobacterium tuberculosis)
cryoEM structure of a respiratory membrane-bound hydrogenase
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6cfw
Q-score: 0.499
Yu H, Wu CH, Schut GJ, Haja DK, Zhao G, Peters JW, Adams MWW, Li H
Cell (2018) 173 pp. 1636- [ Pubmed: 29754813 DOI: doi:10.1016/j.cell.2018.03.071 ]
- Mbh subunit (10 kDa, Protein from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
- Membrane-bound hydrogenase (mbh) complex (Complex from Pyrococcus furiosus)
- Monovalent cation/h+ antiporter subunit e (18 kDa, Protein from Pyrococcus furiosus COM1)
- Membrane-bound hydrogenase subunit beta (20 kDa, Protein from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
- Formyl[bis(hydrocyanato-1kappac)]ironnickel(fe-ni) (195 Da, Ligand)
- Monovalent cation/h+ antiporter subunit g (13 kDa, Protein from Pyrococcus furiosus COM1)
- Mbh subunit (11 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh-plastoquinone oxidoreductase subunit (15 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit f (9 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit c (12 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit b (15 kDa, Protein from Pyrococcus furiosus COM1)
- Mbh subunit (13 kDa, Protein from Pyrococcus furiosus COM1)
- Iron/sulfur cluster (351 Da, Ligand)
- Mbh13 nadh dehydrogenase subunit (35 kDa, Protein from Pyrococcus furiosus COM1)
- Probable membrane-bound hydrogenase subunit mbhj (18 kDa, Protein from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
- Membrane-bound hydrogenase subunit alpha (43 kDa, Protein from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
- Monovalent cation/h+ antiporter subunit d (55 kDa, Protein from Pyrococcus furiosus COM1)