Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6u8y
Q-score: 0.414
Yu H, Haja DK, Schut GJ, Wu CH, Meng X, Zhao G, Li H, Adams MWW
Nat Commun (2020) 11 pp. 5953-5953 [ DOI: doi:10.1038/s41467-020-19697-7 Pubmed: 33230146 ]
- Monovalent cation/h+ antiporter subunit b (25 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit d (44 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit c (12 kDa, Protein from Pyrococcus furiosus COM1)
- Duf4040 domain-containing protein (10 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit i (24 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit b (22 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit c (20 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit (33 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh dehydrogenase subunit m (67 kDa, Protein from Pyrococcus furiosus COM1)
- Iron/sulfur cluster (351 Da, Ligand)
- Monovalent cation/h+ antiporter subunit f (9 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit e (19 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit g (13 kDa, Protein from Pyrococcus furiosus COM1)
- Respiratory membrane complex (Complex from Pyrococcus furiosus)
- Nadh dehydrogenase subunit n (53 kDa, Protein from Pyrococcus furiosus COM1)
Cryo-EM structure of S. cerevisiae Drs2p-Cdc50p in the PI4P-activated form
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6psx
Q-score: 0.383
Bai L, Kovach A, You Q, Hsu HC, Zhao G, Li H
Nat Commun (2019) 10 pp. 4142-4142 [ Pubmed: 31515475 DOI: doi:10.1038/s41467-019-12191-9 ]
- Probable phospholipid-transporting atpase drs2 (153 kDa, Protein from Saccharomyces cerevisiae W303)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cell division control protein 50 (45 kDa, Protein from Saccharomyces cerevisiae W303)
- Drs2p-cdc50p complex (Complex from Saccharomyces cerevisiae W303)
Cryo-EM structure of S. cerevisiae Drs2p-Cdc50p in the autoinhibited apo form
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6psy
Q-score: 0.506
Bai L, Kovach A, You Q, Hsu HC, Zhao G, Li H
Nat Commun (2019) 10 pp. 4142-4142 [ Pubmed: 31515475 DOI: doi:10.1038/s41467-019-12191-9 ]
- Cell division control protein 50 (45 kDa, Protein from Saccharomyces cerevisiae W303)
- Probable phospholipid-transporting atpase drs2 (153 kDa, Protein from Saccharomyces cerevisiae W303)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Drs2p-cdc50p complex (Complex from Saccharomyces cerevisiae W303)
Mtb ClpB in complex with ATPgammaS and casein, Conformer 1
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6dju
Q-score: 0.401
Yu H, Lupoli TJ, Kovach A, Meng X, Zhao G, Nathan CF, Li H
PNAS (2018) 115 pp. E9560-E9569 [ Pubmed: 30257943 DOI: doi:10.1073/pnas.1810648115 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chaperone protein clpb (92 kDa, Protein from Mycobacterium tuberculosis)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Casein polyalanine model (1 kDa, Protein from Bos taurus)
- Mtb clpb in complex with atpgammas and casein (Complex from Mycobacterium tuberculosis)
Mtb ClpB in complex with ATPgammaS and casein, Conformer 2
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6djv
Q-score: 0.42
Yu H, Lupoli TJ, Kovach A, Meng X, Zhao G, Nathan CF, Li H
PNAS (2018) 115 pp. E9560-E9569 [ Pubmed: 30257943 DOI: doi:10.1073/pnas.1810648115 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chaperone protein clpb (92 kDa, Protein from Mycobacterium tuberculosis)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Casein polyalanine model (1 kDa, Protein from Bos taurus)
- Mtb clpb in complex with atpgammas and casein (Complex from Mycobacterium tuberculosis)
cryoEM structure of a respiratory membrane-bound hydrogenase
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6cfw
Q-score: 0.499
Yu H, Wu CH, Schut GJ, Haja DK, Zhao G, Peters JW, Adams MWW, Li H
Cell (2018) 173 pp. 1636- [ Pubmed: 29754813 DOI: doi:10.1016/j.cell.2018.03.071 ]
- Mbh subunit (10 kDa, Protein from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
- Membrane-bound hydrogenase (mbh) complex (Complex from Pyrococcus furiosus)
- Monovalent cation/h+ antiporter subunit e (18 kDa, Protein from Pyrococcus furiosus COM1)
- Membrane-bound hydrogenase subunit beta (20 kDa, Protein from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
- Formyl[bis(hydrocyanato-1kappac)]ironnickel(fe-ni) (195 Da, Ligand)
- Monovalent cation/h+ antiporter subunit g (13 kDa, Protein from Pyrococcus furiosus COM1)
- Mbh subunit (11 kDa, Protein from Pyrococcus furiosus COM1)
- Nadh-plastoquinone oxidoreductase subunit (15 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit f (9 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit c (12 kDa, Protein from Pyrococcus furiosus COM1)
- Monovalent cation/h+ antiporter subunit b (15 kDa, Protein from Pyrococcus furiosus COM1)
- Mbh subunit (13 kDa, Protein from Pyrococcus furiosus COM1)
- Iron/sulfur cluster (351 Da, Ligand)
- Mbh13 nadh dehydrogenase subunit (35 kDa, Protein from Pyrococcus furiosus COM1)
- Probable membrane-bound hydrogenase subunit mbhj (18 kDa, Protein from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
- Membrane-bound hydrogenase subunit alpha (43 kDa, Protein from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
- Monovalent cation/h+ antiporter subunit d (55 kDa, Protein from Pyrococcus furiosus COM1)
The Cryo-EM structure of a eukaryotic oligosaccharyl transferase complex
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6c26
Q-score: 0.503
Bai L, Wang T, Zhao G, Kovach A, Li H
Nature (2018) 555 pp. 328-333 [ DOI: doi:10.1038/nature25755 Pubmed: 29466327 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit ost4 (3 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit ost5 (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit ost2 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Oligosaccharyl transferase complex (Complex from Saccharomyces cerevisiae)
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3 (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- (4r,7r)-4-hydroxy-n,n,n-trimethyl-4,9-dioxo-7-[(undecanoyloxy)methyl]-3,5,8-trioxa-4lambda~5~-phosphadocosan-1-aminium (636 Da, Ligand)
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 (54 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit wbp1 (49 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit swp1 (31 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt3 (81 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Cryo-EM structure of Mcm2-7 double hexamer on dsDNA
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 5bk4
Q-score: 0.393
Noguchi Y, Yuan Z, Bai L, Schneider S, Zhao G, Stillman B, Speck C, Li H
PNAS (2017) 114 pp. E9529-E9538 [ Pubmed: 29078375 DOI: doi:10.1073/pnas.1712537114 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Mcm double hexamer bound to double-stranded dna (Complex from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae)
- Dna (60-mer), strand 1 (18 kDa, DNA from Saccharomyces cerevisiae)
- Mcm double hexamer (Complex from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm3 (107 kDa, Protein from Saccharomyces cerevisiae)
- Dna (60-mer), strand 2 (18 kDa, DNA from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm5 (86 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae)
- Synthetic double-stranded dna (Complex from Saccharomyces cerevisiae)