Single particle cryoEM data of Human OGG1 bound to a 35-bp DNA with an 8-oxoG in the middle
Single particle cryoEM data of Nucleosome core particle containing an 8-oxoG damage site
Human OGG1 bound to a 35-bp DNA with an 8-oxoG in the middle
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8vx4
Q-score: 0.358
You Q, Feng X, Cai Y, Baylin SB, Li H
Commun Biol (2024) 7 pp. 1202-1202 [ DOI: doi:10.1038/s42003-024-06919-7 Pubmed: 39341999 ]
- Dna (35-mer) (10 kDa, DNA from synthetic construct)
- Dna (35-mer) (10 kDa, DNA from synthetic construct)
- N-glycosylase/dna lyase (43 kDa, Protein from Homo sapiens)
- Complex of human ogg1 with a 35 bp dna duplex containing 8-oxog (Complex from Homo sapiens)
Nucleosome core particle containing an 8-oxoG damage site
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8vx5
Q-score: 0.493
You Q, Feng X, Cai Y, Baylin SB, Li H
Commun Biol (2024) 7 pp. 1202-1202 [ DOI: doi:10.1038/s42003-024-06919-7 Pubmed: 39341999 ]
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Histone h2a (18 kDa, Protein from Xenopus laevis)
- Complex of human ogg1 with a 35 bp dna duplex containing 8-oxog (Complex from Homo sapiens)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Histone h4 (13 kDa, Protein from Xenopus laevis)
Human OGG1 bound at the nucleosomal DNA entry site
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8vx6
Q-score: 0.424
You Q, Feng X, Cai Y, Baylin SB, Li H
Commun Biol (2024) 7 pp. 1202-1202 [ DOI: doi:10.1038/s42003-024-06919-7 Pubmed: 39341999 ]
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Histone h2a (18 kDa, Protein from Xenopus laevis)
- Complex of human ogg1 with a 35 bp dna duplex containing 8-oxog (Complex from Homo sapiens)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- N-glycosylase/dna lyase (43 kDa, Protein from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Histone h4 (13 kDa, Protein from Xenopus laevis)
Human OGG1 bound at the nucleosomal super helical location -5
Human OGG1 bound at the nucleosomal super helical location +6
Structure of the S. cerevisiae P4B ATPase lipid flippase in the E2P state
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7rd6
Q-score: 0.439
Bai L, Jain BK, You Q, Duan HD, Takar M, Graham TR, Li H
Nat Commun (2021) 12 pp. 5963-5963 [ Pubmed: 34645814 DOI: doi:10.1038/s41467-021-26273-0 ]
- Beryllium trifluoride ion (66 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Probable phospholipid-transporting atpase neo1 (130 kDa, Protein from Saccharomyces cerevisiae)
- P4b atpase lipid flippase in the e2p state (Complex from Saccharomyces cerevisiae)
Structure of the S. cerevisiae P4B ATPase lipid flippase in the E2P-transition state
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 7rd7
Q-score: 0.48
Bai L, Jain BK, You Q, Duan HD, Takar M, Graham TR, Li H
Nat Commun (2021) 12 pp. 5963-5963 [ DOI: doi:10.1038/s41467-021-26273-0 Pubmed: 34645814 ]
- Tetrafluoroaluminate ion (102 Da, Ligand)
- P4b atpase lipid flippase in the e2p-transition state (Complex from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Probable phospholipid-transporting atpase neo1 (130 kDa, Protein from Saccharomyces cerevisiae)
Structure of the S. cerevisiae P4B ATPase lipid flippase in the E1-ATP state
Resolution: 5.64 Å
EM Method: Single-particle
Fitted PDBs: 7rd8
Q-score: 0.195
Bai L, Jain BK, You Q, Duan HD, Takar M, Graham TR, Li H
Nat Commun (2021) 12 pp. 5963-5963 [ DOI: doi:10.1038/s41467-021-26273-0 Pubmed: 34645814 ]
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Probable phospholipid-transporting atpase neo1 (130 kDa, Protein from Saccharomyces cerevisiae)
- P4b atpase lipid flippase in the e1-atp state (Complex from Saccharomyces cerevisiae)