Single particle cryoEM data of Human OGG1 bound to a 35-bp DNA with an 8-oxoG in the middle
Single particle cryoEM data of Nucleosome core particle containing an 8-oxoG damage site
Human OGG1 bound to a 35-bp DNA with an 8-oxoG in the middle
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8vx4
Q-score: 0.358
You Q, Feng X, Cai Y, Baylin SB, Li H
Commun Biol (2024) 7 pp. 1202-1202 [ Pubmed: 39341999 DOI: doi:10.1038/s42003-024-06919-7 ]
- Complex of human ogg1 with a 35 bp dna duplex containing 8-oxog (Complex from Homo sapiens)
- N-glycosylase/dna lyase (43 kDa, Protein from Homo sapiens)
- Dna (35-mer) (10 kDa, DNA from synthetic construct)
- Dna (35-mer) (10 kDa, DNA from synthetic construct)
Nucleosome core particle containing an 8-oxoG damage site
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8vx5
Q-score: 0.493
You Q, Feng X, Cai Y, Baylin SB, Li H
Commun Biol (2024) 7 pp. 1202-1202 [ Pubmed: 39341999 DOI: doi:10.1038/s42003-024-06919-7 ]
- Complex of human ogg1 with a 35 bp dna duplex containing 8-oxog (Complex from Homo sapiens)
- Histone h4 (13 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h2a (18 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
Human OGG1 bound at the nucleosomal DNA entry site
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8vx6
Q-score: 0.424
You Q, Feng X, Cai Y, Baylin SB, Li H
Commun Biol (2024) 7 pp. 1202-1202 [ Pubmed: 39341999 DOI: doi:10.1038/s42003-024-06919-7 ]
- Complex of human ogg1 with a 35 bp dna duplex containing 8-oxog (Complex from Homo sapiens)
- Histone h4 (13 kDa, Protein from Xenopus laevis)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- N-glycosylase/dna lyase (43 kDa, Protein from Homo sapiens)
- Dna (167-mer) (51 kDa, DNA from synthetic construct)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h2a (18 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
Human OGG1 bound at the nucleosomal super helical location -5
Human OGG1 bound at the nucleosomal super helical location +6
Structure of the S. cerevisiae ER membrane complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6wb9
Q-score: 0.532
Bai L, You Q, Feng X, Kovach A, Li H
Nature (2020) 584 pp. 475-478 [ Pubmed: 32494008 DOI: doi:10.1038/s41586-020-2389-3 ]
- Er membrane protein complex subunit 6 (12 kDa, Protein from Saccharomyces cerevisiae W303)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Endoplasmic reticulum membrane protein complex subunit 10 (22 kDa, Protein from Saccharomyces cerevisiae W303)
- Er membrane protein complex subunit 5 (15 kDa, Protein from Saccharomyces cerevisiae W303)
- Er membrane protein complex subunit 1 (87 kDa, Protein from Saccharomyces cerevisiae W303)
- Er membrane protein complex subunit 4 (21 kDa, Protein from Saccharomyces cerevisiae W303)
- Er membrane protein complex subunit 3 (28 kDa, Protein from Saccharomyces cerevisiae W303)
- Er membrane complex (Complex from Saccharomyces cerevisiae W303)
- Er membrane protein complex subunit 2 (33 kDa, Protein from Saccharomyces cerevisiae W303)
- Protein sop4 (26 kDa, Protein from Saccharomyces cerevisiae W303)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)