Structure of Ctf4 trimer in complex with three CMG helicases
Resolution: 7.0 Å
EM Method: Single-particle
Fitted PDBs: 6pto
Q-score: 0.087
Yuan Z, Georgescu R, Santos RLA, Zhang D, Bai L, Yao NY, Zhao G, O'Donnell ME, Li H
eLife (2019) 8 [ Pubmed: 31589141 DOI: doi:10.7554/eLife.47405 ]
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae)
- Minichromosome maintenance protein 5 (86 kDa, Protein from Saccharomyces cerevisiae)
- Cell division control protein 45 (74 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication complex gins protein psf1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Cmg-cmg-cmg-ctf4 (Complex from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm3 (107 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication complex gins protein sld5 (33 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication complex gins protein psf3 (21 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication complex gins protein psf2 (25 kDa, Protein from Saccharomyces cerevisiae)
- Dna polymerase alpha-binding protein (104 kDa, Protein from Saccharomyces cerevisiae)
Yuan Z, Georgescu R, Santos RLA, Zhang D, Bai L, Yao NY, Zhao G, O'Donnell ME, Li H
eLife (2019) 8 [ Pubmed: 31589141 DOI: doi:10.7554/eLife.47405 ]
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6jcq
Q-score: 0.414
Zhang R, Xu G, Cao L, Sun Z, He Y, Cui M, Sun Y, Li S, Li H, Qin L, Hu M, Yuan Z, Rao Z, Ding W, Rao Z, Lou Z
Nat Commun (2019) 10 pp. 3760-3760 [ DOI: doi:10.1038/s41467-019-11668-x Pubmed: 31434885 ]
- Capsid protein (Complex from Adeno-associated virus - 1)
- Adeno-associated virus - 1 (Complex)
- Pkd2 (Cellular component from Homo sapiens)
- Dyslexia-associated protein kiaa0319-like protein (9 kDa, Protein from Homo sapiens)
- Capsid protein (58 kDa, Protein from Adeno-associated virus - 1)
AAV1 in neutral condition at 3.07 Ang
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 6jcr
Q-score: 0.452
Zhang R, Xu G, Cao L, Sun Z, He Y, Cui M, Sun Y, Li S, Li H, Qin L, Hu M, Yuan Z, Rao Z, Ding W, Rao Z, Lou Z
Nat Commun (2019) 10 pp. 3760-3760 [ DOI: doi:10.1038/s41467-019-11668-x Pubmed: 31434885 ]
- Capsid protein (58 kDa, Protein from Adeno-associated virus - 1)
- Adeno-associated virus - 1 (Virus from Adeno-associated virus - 1)
Cryo-EM structure of S. cerevisiae Drs2p-Cdc50p in the PI4P-activated form
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6psx
Q-score: 0.383
Bai L, Kovach A, You Q, Hsu HC, Zhao G, Li H
Nat Commun (2019) 10 pp. 4142-4142 [ DOI: doi:10.1038/s41467-019-12191-9 Pubmed: 31515475 ]
- Drs2p-cdc50p complex (Complex from Saccharomyces cerevisiae W303)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cell division control protein 50 (45 kDa, Protein from Saccharomyces cerevisiae W303)
- Probable phospholipid-transporting atpase drs2 (153 kDa, Protein from Saccharomyces cerevisiae W303)
Cryo-EM structure of S. cerevisiae Drs2p-Cdc50p in the autoinhibited apo form
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6psy
Q-score: 0.506
Bai L, Kovach A, You Q, Hsu HC, Zhao G, Li H
Nat Commun (2019) 10 pp. 4142-4142 [ DOI: doi:10.1038/s41467-019-12191-9 Pubmed: 31515475 ]
- Drs2p-cdc50p complex (Complex from Saccharomyces cerevisiae W303)
- Probable phospholipid-transporting atpase drs2 (153 kDa, Protein from Saccharomyces cerevisiae W303)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cell division control protein 50 (45 kDa, Protein from Saccharomyces cerevisiae W303)
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 6jcs
Q-score: 0.433
Zhang R, Xu G, Cao L, Sun Z, He Y, Cui M, Sun Y, Li S, Li H, Qin L, Hu M, Yuan Z, Rao Z, Ding W, Rao Z, Lou Z
Nat Commun (2019) 10 pp. 3760-3760 [ DOI: doi:10.1038/s41467-019-11668-x Pubmed: 31434885 ]
- Capsid protein vp1 (Complex from Adeno-associated virus - 5)
- Dyslexia-associated protein kiaa0319-like protein (10 kDa, Protein from Homo sapiens)
- Pkd1 (Cellular component from Homo sapiens)
- Capsid protein (58 kDa, Protein from Adeno-associated virus - 5)
- Adeno-associated virus - 5 (Complex)
AAV5 in neutral condition at 3.18 Ang
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 6jct
Q-score: 0.446
Zhang R, Xu G, Cao L, Sun Z, He Y, Cui M, Sun Y, Li S, Li H, Qin L, Hu M, Yuan Z, Rao Z, Ding W, Rao Z, Lou Z
Nat Commun (2019) 10 pp. 3760-3760 [ DOI: doi:10.1038/s41467-019-11668-x Pubmed: 31434885 ]
- Adeno-associated virus - 5 (Virus from Adeno-associated virus - 5)
- Capsid protein (58 kDa, Protein from Adeno-associated virus - 5)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6p25
Q-score: 0.47
Bai L, Kovach A, You Q, Kenny A, Li H
Nat Struct Mol Biol (2019) 26 pp. 704-711 [ Pubmed: 31285605 DOI: doi:10.1038/s41594-019-0262-6 ]
- (3r)-3,31-dimethyl-7,11,15,19,23,27-hexamethylidenedotriacont-31-en-1-yl dihydrogen phosphate (644 Da, Ligand)
- Acceptor peptide (478 Da, Protein from Saccharomyces cerevisiae W303)
- Protein o-mannosyl transferase complex (Complex from Saccharomyces cerevisiae W303)
- 1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphocholine (758 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Dolichyl-phosphate-mannose--protein mannosyltransferase 2 (86 kDa, Protein from Saccharomyces cerevisiae W303)
- Dolichyl-phosphate-mannose--protein mannosyltransferase 1 (92 kDa, Protein from Saccharomyces cerevisiae W303)
Structure of S. cerevisiae protein O-mannosyltransferase Pmt1-Pmt2 complex bound to the sugar donor
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6p2r
Q-score: 0.454
Bai L, Kovach A, You Q, Kenny A, Li H
Nat Struct Mol Biol (2019) 26 pp. 704-711 [ Pubmed: 31285605 DOI: doi:10.1038/s41594-019-0262-6 ]
- (3r)-3,31-dimethyl-7,11,15,19,23,27-hexamethylidenedotriacont-31-en-1-yl dihydrogen phosphate (644 Da, Ligand)
- Protein o-mannosyl transferase complex (Complex from Saccharomyces cerevisiae W303)
- 1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphocholine (758 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Dolichyl-phosphate-mannose--protein mannosyltransferase 2 (86 kDa, Protein from Saccharomyces cerevisiae W303)
- Dolichyl-phosphate-mannose--protein mannosyltransferase 1 (92 kDa, Protein from Saccharomyces cerevisiae W303)