Structure of CD69-bound S1PR1 coupled to heterotrimeric Gi
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 8g94
Q-score: 0.507
Chen H, Qin Y, Chou M, Cyster JG, Li X
eLife (2023) 12 [ Pubmed: 37039481 DOI: doi:10.7554/eLife.88204 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Scfv16 (27 kDa, Protein from Mus musculus)
- Early activation antigen cd69 (23 kDa, Protein from Homo sapiens)
- Sphingosine 1-phosphate receptor 1 (40 kDa, Protein from Homo sapiens)
- Complex of cd69-bound s1pr1 coupled to heterotrimeric gi (200 kDa, Complex from Homo sapiens)
The V1 region of bovine V-ATPase in complex with human mEAK7 (focused refinement)
Resolution: 3.73 Å
EM Method: Single-particle
Fitted PDBs: 7une
Q-score: 0.496
Nat Commun (2022) 13 pp. 3272-3272 [ DOI: doi:10.1038/s41467-022-30899-z Pubmed: 35672408 ]
- V-type proton atpase subunit e 1 (26 kDa, Protein from Bos taurus)
- Kiaa1609 protein, isoform cra_a (51 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit d (28 kDa, Protein from Bos taurus)
- V-type proton atpase subunit b, brain isoform (56 kDa, Protein from Bos taurus)
- V-type proton atpase subunit g (13 kDa, Protein from Bos taurus)
- Cryo-em structure of the v1 region of bovine v-atpase in complex with human meak7 (Complex from Bos taurus)
- V-type proton atpase catalytic subunit a (68 kDa, Protein from Bos taurus)
CryoEM structure of a mEAK7 bound human V-ATPase complex
Resolution: 4.08 Å
EM Method: Single-particle
Fitted PDBs: 7unf
Q-score: 0.479
Nat Commun (2022) 13 pp. 3272-3272 [ DOI: doi:10.1038/s41467-022-30899-z Pubmed: 35672408 ]
- V-type proton atpase subunit c 1 (43 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit s1 (52 kDa, Protein from Homo sapiens)
- V-type proton atpase 16 kda proteolipid subunit (15 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Kiaa1609 protein, isoform cra_a (51 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit d 1 (40 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit f (13 kDa, Protein from Homo sapiens)
- Ribonuclease kappa (15 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- V-type proton atpase subunit b, brain isoform (56 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit e 1 (26 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit d (28 kDa, Protein from Homo sapiens)
- Cryoem structure of meak7 bound human v-atpase complex (Complex from Homo sapiens)
- V-type proton atpase subunit h (55 kDa, Protein from Homo sapiens)
- V-type proton atpase catalytic subunit a (68 kDa, Protein from Homo sapiens)
- Atpase h(+)-transporting lysosomal accessory protein 2 (38 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit g 1 (13 kDa, Protein from Homo sapiens)
- V-type proton atpase 116 kda subunit a 4 (98 kDa, Protein from Homo sapiens)
- V-type proton atpase 21 kda proteolipid subunit (21 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit e 1 (9 kDa, Protein from Homo sapiens)
Cryo-EM structure of ATP-bound human peroxisomal fatty acid transporter ABCD1
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 7shm
Q-score: 0.488
Cell Res (2022) 32 pp. 214-217 [ Pubmed: 34754073 DOI: doi:10.1038/s41422-021-00585-8 ]
- Atp-binding cassette sub-family d member 1 (84 kDa, Protein from Homo sapiens)
- Atp-bound human abcd1 e630q (Complex from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
Cryo-EM structure of oleoyl-CoA-bound human peroxisomal fatty acid transporter ABCD1
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7shn
Q-score: 0.501
Cell Res (2022) 32 pp. 214-217 [ Pubmed: 34754073 DOI: doi:10.1038/s41422-021-00585-8 ]
- Oleoyl-coa-bound human abcd1 e630q (Complex from Homo sapiens)
- S-{(3r,5r,9r)-1-[(2r,3s,4r,5r)-5-(6-amino-9h-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (9z)-octadec-9-enethioate (non-preferred name) (1 kDa, Ligand)
- Atp-binding cassette sub-family d member 1 (79 kDa, Protein from Homo sapiens)
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 7n4u
Q-score: 0.467
Long T, Liu Y, Qin Y, DeBose-Boyd RA, Li X
Sci Adv (2021) 7 [ Pubmed: 34407950 DOI: doi:10.1126/sciadv.abh3997 ]
- (2r)-2,5,7,8-tetramethyl-2-[(4r,8r)-4,8,12-trimethyltridecyl]chroman-6-ol (430 Da, Ligand)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- Isoform 2 of npc1-like intracellular cholesterol transporter 1 (145 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Npc1l1 apo state (Cell from Homo sapiens)
Structure of cholesterol-bound human NPC1L1
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 7n4v
Q-score: 0.453
Long T, Liu Y, Qin Y, DeBose-Boyd RA, Li X
Sci Adv (2021) 7 [ Pubmed: 34407950 DOI: doi:10.1126/sciadv.abh3997 ]
- Human npc1l1 supplemented with cholesterol (Cellular component from Homo sapiens)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- Isoform 2 of npc1-like intracellular cholesterol transporter 1 (145 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of human NPC1L1 mutant-W347R
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7n4x
Q-score: 0.525
Long T, Liu Y, Qin Y, DeBose-Boyd RA, Li X
Sci Adv (2021) 7 [ Pubmed: 34407950 DOI: doi:10.1126/sciadv.abh3997 ]
- Human npc1l1 mutant-w347r (Cellular component from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Isoform 2 of npc1-like intracellular cholesterol transporter 1 (145 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Electron cryo-microscopy of peptidyl-(~A/P)tRNA-60S particles, ES27out
Shen PS, Park J, Qin Y, Li X, Parsawar K, Larson MH, Cox J, Cheng Y, Lambowitz AM, Weissman JS, Brandman O, Frost A
Science (2015) 347 pp. 75-78 [ Pubmed: 25554787 DOI: doi:10.1126/science.1259724 ]
Electron cryo-microscopy of peptidyl-(~A/P)tRNA-60S particles, ES27in
Shen PS, Park J, Qin Y, Li X, Parsawar K, Larson MH, Cox J, Cheng Y, Lambowitz AM, Weissman JS, Brandman O, Frost A
Science (2015) 347 pp. 75-78 [ Pubmed: 25554787 DOI: doi:10.1126/science.1259724 ]