V gamma9 V delta2 TCR and CD3 complex in LMNG
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8jc0
Q-score: 0.438
Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q
Nature (2024) 630 pp. 222-229 [ DOI: doi:10.1038/s41586-024-07439-4 Pubmed: 38657677 ]
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T cell receptor delta variable 2,t cell receptor delta constant (34 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- V gamma9 v delta2 t cell receptor in complex with cd3 (Complex from Homo sapiens)
- T cell receptor gamma variable 9,t cell receptor gamma constant 1 (37 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (21 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
Vgamma5 Vdelta1 T cell receptor complex
Resolution: 9.5 Å
EM Method: Single-particle
Fitted PDBs: 8jcb
Q-score: 0.064
Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q
Nature (2024) 630 pp. 222-229 [ DOI: doi:10.1038/s41586-024-07439-4 Pubmed: 38657677 ]
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- T cell receptor gamma variable 5,t cell receptor gamma constant 1 (37 kDa, Protein from Homo sapiens)
- Vgamma5 vdelta1 t cell receptor complex (Complex from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (21 kDa, Protein from Homo sapiens)
- T cell receptor delta variable 1,t cell receptor delta constant (34 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
Vgamma5Vdelta1 EH TCR-CD3 complex
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8wxe
Q-score: 0.329
Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q
Nature (2024) 630 pp. 222-229 [ DOI: doi:10.1038/s41586-024-07439-4 Pubmed: 38657677 ]
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- Signal peptide,flag tag,t cell receptor delta variable 1,t cell receptor delta constant (34 kDa, Protein from Homo sapiens)
- Signal peptide,flag tag,t cell receptor gamma variable 5,t cell receptor gamma constant 1 (37 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (21 kDa, Protein from Homo sapiens)
- T cell receptor delta 1 gamma 5 eh mutant (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
T cell receptor delta 2 gamma 9 with F283A, F290A, and F291A
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8wy0
Q-score: 0.402
Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q
Nature (2024) 630 pp. 222-229 [ DOI: doi:10.1038/s41586-024-07439-4 Pubmed: 38657677 ]
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- Signal peptide,flag tag,t cell receptor gamma variable 9,t cell receptor gamma constant 1 (37 kDa, Protein from Homo sapiens)
- T cell receptor delta 2 gamma 9 with f283a, f290a, f291a (Cell from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (21 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
- Signal peptide,flag tag,t cell receptor delta variable 2,t cell receptor delta constant (34 kDa, Protein from Homo sapiens)
T cell receptor delta 2 gamma 9 with TCRD TM domain chimera of TRAC
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8wyi
Q-score: 0.385
Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q
Nature (2024) 630 pp. 222-229 [ DOI: doi:10.1038/s41586-024-07439-4 Pubmed: 38657677 ]
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- Signal peptide,flag tag,t cell receptor gamma variable 9,t cell receptor gamma constant 1,t cell receptor gamma variable 9,t cell receptor gamma constant 1 (37 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- Signal peptide,flag tag,t cell receptor delta variable 2,t cell receptor delta constant,t cell receptor alpha chain constant,t cell receptor delta variable 2,t cell receptor delta constant,t cell receptor alpha chain constant (34 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (21 kDa, Protein from Homo sapiens)
- T cell receptor delta 2 gamma 9 with tcrd tm domain change to trac tm domain (Complex from Homo sapiens)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
T cell receptor V delta2 V gamma9 in GDN
Resolution: 4.12 Å
EM Method: Single-particle
Fitted PDBs: 8yc0
Q-score: 0.349
Xin W, Huang B, Chi X, Liu Y, Xu M, Zhang Y, Li X, Su Q, Zhou Q
Nature (2024) 630 pp. 222-229 [ DOI: doi:10.1038/s41586-024-07439-4 Pubmed: 38657677 ]
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T cell receptor delta variable 2,t cell receptor delta constant (34 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- Tcr v delta2 v gamma 9 in complex with cd3 in gdn (Cell from Homo sapiens)
- T cell receptor gamma variable 9,t cell receptor gamma constant 1 (37 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (21 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6m1y
Q-score: 0.494
Chi X, Li X, Chen Y, Zhang Y, Su Q, Zhou Q
Cell Res (2021) 31 pp. 482-484 [ DOI: doi:10.1038/s41422-020-00437-x Pubmed: 33199848 ]
- Solute carrier family 12 member 6 (123 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Water (18 Da, Ligand)
- Potassium ion (39 Da, Ligand)
- Kcc3 (Complex from Homo sapiens)
- Chloride ion (35 Da, Ligand)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6m22
Q-score: 0.566
Chi X, Li X, Chen Y, Zhang Y, Su Q, Zhou Q
Cell Res (2021) 31 pp. 482-484 [ DOI: doi:10.1038/s41422-020-00437-x Pubmed: 33199848 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Potassium ion (39 Da, Ligand)
- Kcc3 bound with dioa (Complex from Homo sapiens)
- Solute carrier family 12 member 6 (123 kDa, Protein from Homo sapiens)
- 2-[[(2~{r})-2-butyl-6,7-bis(chloranyl)-2-cyclopentyl-1-oxidanylidene-3~{h}-inden-5-yl]oxy]ethanoic acid (399 Da, Ligand)
- Water (18 Da, Ligand)
- Chloride ion (35 Da, Ligand)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6m23
Q-score: 0.477
Chi X, Li X, Chen Y, Zhang Y, Su Q, Zhou Q
Cell Res (2021) 31 pp. 482-484 [ DOI: doi:10.1038/s41422-020-00437-x Pubmed: 33199848 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Water (18 Da, Ligand)
- Solute carrier family 12 member 5 (125 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Kcc2 (Complex from Homo sapiens)
- Chloride ion (35 Da, Ligand)