BA.2.86 RBD protein in complex with ACE2.
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 8yzb
Q-score: 0.477
Liu Y, Zhao X, Shi J, Wang Y, Liu H, Hu YF, Hu B, Shuai H, Yuen TT, Chai Y, Liu F, Gong HR, Li J, Wang X, Jiang S, Zhang X, Zhang Y, Li X, Wang L, Hartnoll M, Zhu T, Hou Y, Huang X, Yoon C, Wang Y, He Y, Zhou M, Du L, Zhang X, Chan WM, Chen LL, Cai JP, Yuan S, Zhou J, Huang JD, Yuen KY, To KK, Chan JF, Zhang BZ, Sun L, Wang P, Chu H
Nat Commun (2024) 15 pp. 8728-8728 [ Pubmed: 39379369 DOI: doi:10.1038/s41467-024-53033-7 ]
- Spike glycoprotein,fibritin,fusion protein (142 kDa, Protein from synthetic construct)
- Ba.2.86 rbd protein in complex with ace2 (Complex from Homo sapiens)
- Angiotensin-converting enzyme 2 (85 kDa, Protein from Homo sapiens)
Structure of BA.2.86 spike protein in complex with ACE2.
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8yzc
Q-score: 0.267
Liu Y, Zhao X, Shi J, Wang Y, Liu H, Hu YF, Hu B, Shuai H, Yuen TT, Chai Y, Liu F, Gong HR, Li J, Wang X, Jiang S, Zhang X, Zhang Y, Li X, Wang L, Hartnoll M, Zhu T, Hou Y, Huang X, Yoon C, Wang Y, He Y, Zhou M, Du L, Zhang X, Chan WM, Chen LL, Cai JP, Yuan S, Zhou J, Huang JD, Yuen KY, To KK, Chan JF, Zhang BZ, Sun L, Wang P, Chu H
Nat Commun (2024) 15 pp. 8728-8728 [ Pubmed: 39379369 DOI: doi:10.1038/s41467-024-53033-7 ]
Structure of JN.1 RBD protein in complex with ACE2.
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8yzd
Q-score: 0.573
Liu Y, Zhao X, Shi J, Wang Y, Liu H, Hu YF, Hu B, Shuai H, Yuen TT, Chai Y, Liu F, Gong HR, Li J, Wang X, Jiang S, Zhang X, Zhang Y, Li X, Wang L, Hartnoll M, Zhu T, Hou Y, Huang X, Yoon C, Wang Y, He Y, Zhou M, Du L, Zhang X, Chan WM, Chen LL, Cai JP, Yuan S, Zhou J, Huang JD, Yuen KY, To KK, Chan JF, Zhang BZ, Sun L, Wang P, Chu H
Nat Commun (2024) 15 pp. 8728-8728 [ Pubmed: 39379369 DOI: doi:10.1038/s41467-024-53033-7 ]
The JN.1 spike protein (S) in complex with ACE2.
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8yze
Q-score: 0.25
Liu Y, Zhao X, Shi J, Wang Y, Liu H, Hu YF, Hu B, Shuai H, Yuen TT, Chai Y, Liu F, Gong HR, Li J, Wang X, Jiang S, Zhang X, Zhang Y, Li X, Wang L, Hartnoll M, Zhu T, Hou Y, Huang X, Yoon C, Wang Y, He Y, Zhou M, Du L, Zhang X, Chan WM, Chen LL, Cai JP, Yuan S, Zhou J, Huang JD, Yuen KY, To KK, Chan JF, Zhang BZ, Sun L, Wang P, Chu H
Nat Commun (2024) 15 pp. 8728-8728 [ Pubmed: 39379369 DOI: doi:10.1038/s41467-024-53033-7 ]
Echovirus3 A-particle in complex with 6D10 Fab
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8gsc
Q-score: 0.47
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp1 (26 kDa, Protein from Echovirus E3)
- 6d10 fab (Complex from Mus musculus)
- Vp2 (27 kDa, Protein from Echovirus E3)
- Echovirus3 a-particle in complex with 6d10 fab (Complex)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp3 (25 kDa, Protein from Echovirus E3)
- Echovirus e3 (Virus from Echovirus E3)
Echovirus3 full particle in complex with 6D10 Fab
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8gsd
Q-score: 0.556
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Genome polyprotein (fragment) (7 kDa, Protein from Echovirus E3)
- 6d10 fab (Complex from Mus musculus)
- Echovirus3 full particle in complex with 6d10 fab (Complex)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Genome polyprotein (26 kDa, Protein from Echovirus E3)
- Genome polyprotein (29 kDa, Protein from Echovirus E3)
- Genome polyprotein (fragment) (32 kDa, Protein from Echovirus E3)
- Sphingosine (299 Da, Ligand)
- Echovirus e3 (Virus from Echovirus E3)
Echovirus3 empty particle in complex with 6D10 Fab (upright)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8gse
Q-score: 0.448
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp1 (26 kDa, Protein from Echovirus E3)
- 6d10 fab (Complex from Mus musculus)
- Vp0 (28 kDa, Protein from Echovirus E3)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp3 (25 kDa, Protein from Echovirus E3)
- Echovirus e3 (Virus from Echovirus E3)
- Echovirus3 empty particle in complex with 6d10 fab (upright) (Complex)
Echovirus3 empty particle in complex with 6D10 Fab (sideling)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8gsf
Q-score: 0.445
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp1 (26 kDa, Protein from Echovirus E3)
- 6d10 fab (Complex from Mus musculus)
- Vp0 (28 kDa, Protein from Echovirus E3)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Echovirus3 empty particle in complex with 6d10 fab (sideling) (Complex)
- Vp3 (25 kDa, Protein from Echovirus E3)
- Echovirus e3 (Virus from Echovirus E3)
SARS-CoV-2 S-6P in complex with 9 Fabs
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 7e8c
Q-score: 0.39
Cao Y, Yisimayi A, Bai Y, Huang W, Li X, Zhang Z, Yuan T, An R, Wang J, Xiao T, Du S, Ma W, Song L, Li Y, Li X, Song W, Wu J, Liu S, Li X, Zhang Y, Su B, Guo X, Wei Y, Gao C, Zhang N, Zhang Y, Dou Y, Xu X, Shi R, Lu B, Jin R, Ma Y, Qin C, Wang Y, Feng Y, Xiao J, Xie XS
Cell Res (2021) 31 pp. 732-741 [ Pubmed: 34021265 DOI: doi:10.1038/s41422-021-00514-9 ]
- 604 h, 604 l, n9 h, 368-2 l, 368-2 h, n9 l (Complex)
- Sars-cov-2 s-6p in complex with 9 fabs (Complex from Severe acute respiratory syndrome coronavirus 2)
- 604 h (23 kDa, Protein from Homo sapiens)
- N9 h (24 kDa, Protein from Homo sapiens)
- 604 l (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 s (Complex from Homo sapiens)
- 368-2 h (24 kDa, Protein from Homo sapiens)
- N9 l (22 kDa, Protein from Homo sapiens)
- 368-2 l (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 NTD in complex with N9 Fab
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 7e8f
Q-score: 0.592
Cao Y, Yisimayi A, Bai Y, Huang W, Li X, Zhang Z, Yuan T, An R, Wang J, Xiao T, Du S, Ma W, Song L, Li Y, Li X, Song W, Wu J, Liu S, Li X, Zhang Y, Su B, Guo X, Wei Y, Gao C, Zhang N, Zhang Y, Dou Y, Xu X, Shi R, Lu B, Jin R, Ma Y, Qin C, Wang Y, Feng Y, Xiao J, Xie XS
Cell Res (2021) 31 pp. 732-741 [ Pubmed: 34021265 DOI: doi:10.1038/s41422-021-00514-9 ]
- 368-2 l (23 kDa, Protein from Homo sapiens)
- 604 h (23 kDa, Protein from Homo sapiens)
- Spike protein s1 (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- N9 h (24 kDa, Protein from Homo sapiens)
- Spike protein s1 (33 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 ntd and rbd (Complex from Homo sapiens)
- 368-2 h (24 kDa, Protein from Homo sapiens)
- 604 l (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 ntd in complex with n9 fab (Complex from SARS coronavirus Tor2)
- N9 l (22 kDa, Protein from Homo sapiens)
- N9, 368-2 and 604h fab (Complex)