Structure of the bacteriophage lambda tail tip complex
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8k35
Q-score: 0.539
Xiao H, Tan L, Tan Z, Zhang Y, Chen W, Li X, Song J, Cheng L, Liu H
PLoS Biol (2023) 21 pp. e3002441-e3002441 [ Pubmed: 38096144 DOI: doi:10.1371/journal.pbio.3002441 ]
- Tail tip protein m (12 kDa, Protein from Escherichia phage Lambda)
- Tape measure protein (92 kDa, Protein from Escherichia phage Lambda)
- Tail tip protein l (25 kDa, Protein from Escherichia phage Lambda)
- Tip attachment protein j (124 kDa, Protein from Escherichia phage Lambda)
- Escherichia phage lambda (Virus from Escherichia phage Lambda)
- Iron/sulfur cluster (351 Da, Ligand)
- Tail tip assembly protein i (23 kDa, Protein from Escherichia phage Lambda)
- Tail tube protein (25 kDa, Protein from Escherichia phage Lambda)
Structure of the bacteriophage lambda tail tube
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 8k36
Q-score: 0.54
Xiao H, Tan L, Tan Z, Zhang Y, Chen W, Li X, Song J, Cheng L, Liu H
PLoS Biol (2023) 21 pp. e3002441-e3002441 [ Pubmed: 38096144 DOI: doi:10.1371/journal.pbio.3002441 ]
- Tail tube protein (25 kDa, Protein from Escherichia phage Lambda)
- Escherichia phage lambda (Virus from Escherichia phage Lambda)
Structure of the bacteriophage lambda neck
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8k37
Q-score: 0.518
Xiao H, Tan L, Tan Z, Zhang Y, Chen W, Li X, Song J, Cheng L, Liu H
PLoS Biol (2023) 21 pp. e3002441-e3002441 [ Pubmed: 38096144 DOI: doi:10.1371/journal.pbio.3002441 ]
- Tail tube terminator protein (14 kDa, Protein from Escherichia phage Lambda)
- Tail tube protein (25 kDa, Protein from Escherichia phage Lambda)
- Head-tail connector protein fii (12 kDa, Protein from Escherichia phage Lambda)
- Escherichia phage lambda (Virus from Escherichia phage Lambda)
The structure of bacteriophage lambda portal-adaptor
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8k38
Q-score: 0.561
Xiao H, Tan L, Tan Z, Zhang Y, Chen W, Li X, Song J, Cheng L, Liu H
PLoS Biol (2023) 21 pp. e3002441-e3002441 [ Pubmed: 38096144 DOI: doi:10.1371/journal.pbio.3002441 ]
- Portal protein b (59 kDa, Protein from Escherichia phage Lambda)
- Head completion protein (7 kDa, Protein from Escherichia phage Lambda)
- Escherichia phage lambda (Virus from Escherichia phage Lambda)
Structure of the bacteriophage lambda portal vertex
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8k39
Q-score: 0.49
Xiao H, Tan L, Tan Z, Zhang Y, Chen W, Li X, Song J, Cheng L, Liu H
PLoS Biol (2023) 21 pp. e3002441-e3002441 [ Pubmed: 38096144 DOI: doi:10.1371/journal.pbio.3002441 ]
- Major capsid protein (38 kDa, Protein from Escherichia phage Lambda)
- Portal protein b (59 kDa, Protein from Escherichia phage Lambda)
- Escherichia phage lambda (Virus from Escherichia phage Lambda)
the cryo-EM structure of human mini-SNAPc in complex with hU6-1 PSE
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 7xur
Q-score: 0.474
Sun J, Li X, Hou X, Cao S, Cao W, Zhang Y, Song J, Wang M, Wang H, Yan X, Li Z, Roeder RG, Wang W
Nat Commun (2022) 13 pp. 6871-6871 [ DOI: doi:10.1038/s41467-022-34639-1 Pubmed: 36369505 ]
- Dna (35-mer) (10 kDa, DNA from synthetic construct)
- Human mini-snapc (Complex from Homo sapiens)
- Snrna-activating protein complex subunit 3 (46 kDa, Protein from Homo sapiens)
- Snrna-activating protein complex subunit 4 (60 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Snrna-activating protein complex subunit 1 (33 kDa, Protein from Homo sapiens)
- Dna (Complex)
- The complex of human mini-snapc with hu6-1 pse (Complex)
- Dna (35-mer) (10 kDa, DNA from synthetic construct)
SARS-CoV-2 S-6P in complex with 9 Fabs
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 7e8c
Q-score: 0.39
Cao Y, Yisimayi A, Bai Y, Huang W, Li X, Zhang Z, Yuan T, An R, Wang J, Xiao T, Du S, Ma W, Song L, Li Y, Li X, Song W, Wu J, Liu S, Li X, Zhang Y, Su B, Guo X, Wei Y, Gao C, Zhang N, Zhang Y, Dou Y, Xu X, Shi R, Lu B, Jin R, Ma Y, Qin C, Wang Y, Feng Y, Xiao J, Xie XS
Cell Res (2021) 31 pp. 732-741 [ Pubmed: 34021265 DOI: doi:10.1038/s41422-021-00514-9 ]
- 604 h, 604 l, n9 h, 368-2 l, 368-2 h, n9 l (Complex)
- Sars-cov-2 s-6p in complex with 9 fabs (Complex from Severe acute respiratory syndrome coronavirus 2)
- 604 h (23 kDa, Protein from Homo sapiens)
- N9 h (24 kDa, Protein from Homo sapiens)
- 604 l (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 s (Complex from Homo sapiens)
- 368-2 h (24 kDa, Protein from Homo sapiens)
- N9 l (22 kDa, Protein from Homo sapiens)
- 368-2 l (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 NTD in complex with N9 Fab
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 7e8f
Q-score: 0.592
Cao Y, Yisimayi A, Bai Y, Huang W, Li X, Zhang Z, Yuan T, An R, Wang J, Xiao T, Du S, Ma W, Song L, Li Y, Li X, Song W, Wu J, Liu S, Li X, Zhang Y, Su B, Guo X, Wei Y, Gao C, Zhang N, Zhang Y, Dou Y, Xu X, Shi R, Lu B, Jin R, Ma Y, Qin C, Wang Y, Feng Y, Xiao J, Xie XS
Cell Res (2021) 31 pp. 732-741 [ Pubmed: 34021265 DOI: doi:10.1038/s41422-021-00514-9 ]
- 368-2 l (23 kDa, Protein from Homo sapiens)
- 604 h (23 kDa, Protein from Homo sapiens)
- Spike protein s1 (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- N9 h (24 kDa, Protein from Homo sapiens)
- Spike protein s1 (33 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 ntd and rbd (Complex from Homo sapiens)
- 368-2 h (24 kDa, Protein from Homo sapiens)
- 604 l (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 ntd in complex with n9 fab (Complex from SARS coronavirus Tor2)
- N9 l (22 kDa, Protein from Homo sapiens)
- N9, 368-2 and 604h fab (Complex)