pP1192R-DNA-m-AMSA complex DNA binding/cleavage domain
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 8yge
Q-score: 0.513
Liu R, Sun J, Li LF, Cheng Y, Li M, Fu L, Li S, Peng G, Wang Y, Liu S, Qu X, Ran J, Li X, Pang E, Qiu HJ, Wang Y, Qi J, Wang H, Gao GF
Nucleic Acids Res (2024) 52 pp. 11301-11316 [ Pubmed: 39166497 DOI: doi:10.1093/nar/gkae703 ]
- Magnesium ion (24 Da, Ligand)
- N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide (393 Da, Ligand)
- Dna (12-mer) (3 kDa, DNA from African swine fever virus pig/Kenya/KEN-50/1950)
- Pp1192r-dna-m-amsa complex dna binding/cleavage domain (Complex from African swine fever virus pig/Kenya/KEN-50/1950)
- Dna topoisomerase 2 (135 kDa, Protein from African swine fever virus pig/Kenya/KEN-50/1950)
- Dna (8-mer) (2 kDa, DNA from African swine fever virus pig/Kenya/KEN-50/1950)
- Dna (20-mer) (6 kDa, DNA from African swine fever virus pig/Kenya/KEN-50/1950)
A neutralizing nanobody VHH60 against wt SARS-CoV-2
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8xki
Q-score: 0.441
Liu Q, Lu Y, Cai C, Huang Y, Zhou L, Guan Y, Fu S, Lin Y, Yan H, Zhang Z, Li X, Yang X, Yang H, Guo H, Lan K, Chen Y, Hou SC, Xiong Y
Cell Death Dis (2024) 15 pp. 458-458 [ Pubmed: 38937437 DOI: doi:10.1038/s41419-024-06802-7 ]
- Nanobody vhh60 (13 kDa, Protein from synthetic construct)
- Spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike glycoprotein complex with vhh60 nanobody (Complex)
- Nanobody (Complex from synthetic construct)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Fe-O nanocluster of form-IX in the 4-fold channel of Ureaplasma diversum ferritin
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8wqu
Q-score: 0.613
Wang W, Xi H, Fu D, Ma D, Gong W, Zhao Y, Li X, Wu L, Guo Y, Zhao G, Wang H
J Am Chem Soc (2024) 146 pp. 11657-11668 [ Pubmed: 38641862 DOI: doi:10.1021/jacs.3c13830 ]
- Ferritin (Complex from Ureaplasma diversum)
- Fe (iii) ion (55 Da, Ligand)
- Ferritin (21 kDa, Protein from Ureaplasma diversum)
Fe-O nanocluster of form-VIII in the 4-fold channel of Ureaplasma diversum ferritin
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8wqv
Q-score: 0.632
Wang W, Xi H, Fu D, Ma D, Gong W, Zhao Y, Li X, Wu L, Guo Y, Zhao G, Wang H
J Am Chem Soc (2024) 146 pp. 11657-11668 [ Pubmed: 38641862 DOI: doi:10.1021/jacs.3c13830 ]
- Ferritin (Complex from Ureaplasma diversum)
- Ferritin (21 kDa, Protein from Ureaplasma diversum)
- Fe (iii) ion (55 Da, Ligand)
Fe-O nanocluster of form-X in the 4-fold channel of Ureaplasma diversum ferritin
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8wqx
Q-score: 0.541
Wang W, Xi H, Fu D, Ma D, Gong W, Zhao Y, Li X, Wu L, Guo Y, Zhao G, Wang H
J Am Chem Soc (2024) 146 pp. 11657-11668 [ Pubmed: 38641862 DOI: doi:10.1021/jacs.3c13830 ]
- Ferritin (Complex from Ureaplasma diversum)
- Fe (iii) ion (55 Da, Ligand)
- Ferritin (21 kDa, Protein from Ureaplasma diversum)
Fe-O nanocluster of form-XI in the 4-fold channel of Ureaplasma diversum ferritin
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8wqy
Q-score: 0.55
Wang W, Xi H, Fu D, Ma D, Gong W, Zhao Y, Li X, Wu L, Guo Y, Zhao G, Wang H
J Am Chem Soc (2024) 146 pp. 11657-11668 [ Pubmed: 38641862 DOI: doi:10.1021/jacs.3c13830 ]
- Water (18 Da, Ligand)
- Ferritin (Complex from Ureaplasma diversum)
- Fe (iii) ion (55 Da, Ligand)
- Ferritin (21 kDa, Protein from Ureaplasma diversum)
Fe-O nanocluster of form-XII in the 4-fold channel of Ureaplasma diversum ferritin
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8wr0
Q-score: 0.54
Wang W, Xi H, Fu D, Ma D, Gong W, Zhao Y, Li X, Wu L, Guo Y, Zhao G, Wang H
J Am Chem Soc (2024) 146 pp. 11657-11668 [ Pubmed: 38641862 DOI: doi:10.1021/jacs.3c13830 ]
- Ferritin (Complex from Ureaplasma diversum)
- Fe (iii) ion (55 Da, Ligand)
- Ferritin (21 kDa, Protein from Ureaplasma diversum)
Cryo-EM Structure of FGF23-FGFR4-aKlotho-HS Quaternary Complex
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 7ysw
Q-score: 0.482
Chen L, Fu L, Sun J, Huang Z, Fang M, Zinkle A, Liu X, Lu J, Pan Z, Wang Y, Liang G, Li X, Chen G, Mohammadi M
Nature (2023) 618 pp. 862-870 [ Pubmed: 37286607 DOI: doi:10.1038/s41586-023-06155-9 ]
- Fgfr4-aklotho-hs (Complex)
- Fibroblast growth factor receptor 4 (23 kDa, Protein from Homo sapiens)
- Fgf23 (Complex)
- Copper (ii) ion (63 Da, Ligand)
- 1:2:1:1 fgf23-fgfr4-aklotho-hs quaternary complex (Complex from Homo sapiens)
- Fibroblast growth factor 23 (20 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Klotho (108 kDa, Protein from Homo sapiens)
Cryo-EM Structure of FGF23-FGFR1c-aKlotho-HS Quaternary Complex
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 7ysh
Q-score: 0.555
Chen L, Fu L, Sun J, Huang Z, Fang M, Zinkle A, Liu X, Lu J, Pan Z, Wang Y, Liang G, Li X, Chen G, Mohammadi M
Nature (2023) 618 pp. 862-870 [ Pubmed: 37286607 DOI: doi:10.1038/s41586-023-06155-9 ]
- Klotho (109 kDa, Protein from Homo sapiens)
- Copper (ii) ion (63 Da, Ligand)
- 1:2:1:1 fgf23-fgfr1c-aklotho-hs quaternary complex (Complex from Homo sapiens)
- Fibroblast growth factor 23 (30 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Isoform 20 of fibroblast growth factor receptor 1 (26 kDa, Protein from Homo sapiens)
Cryo-EM Structure of FGF23-FGFR3c-aKlotho-HS Quaternary Complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7ysu
Q-score: 0.479
Chen L, Fu L, Sun J, Huang Z, Fang M, Zinkle A, Liu X, Lu J, Pan Z, Wang Y, Liang G, Li X, Chen G, Mohammadi M
Nature (2023) 618 pp. 862-870 [ Pubmed: 37286607 DOI: doi:10.1038/s41586-023-06155-9 ]
- Fibroblast growth factor receptor 3 (23 kDa, Protein from Homo sapiens)
- Copper (ii) ion (63 Da, Ligand)
- Fibroblast growth factor 23 (20 kDa, Protein from Homo sapiens)
- 1:2:1:1 fgf23-fgfr3c-aklotho-hs quaternary complex (Complex)
- Zinc ion (65 Da, Ligand)
- Fgf23 (Complex from Homo sapiens)
- Aklotho,fgfr3 (Complex from Homo sapiens)
- Klotho (108 kDa, Protein from Homo sapiens)