Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 9jmz
Q-score: 0.489
Song H, Hao T, Han P, Wang H, Zhang X, Li X, Wang Y, Chen J, Li Y, Jin X, Duan X, Zhang W, Bi Y, Jin R, Sun L, Wang N, Gao GF
Cell (2025) [ Pubmed: 39848246 DOI: doi:10.1016/j.cell.2025.01.019 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Human-infecting bovine influenza h5n1 hemagglutinin complexed with avian receptor analog lsta (Complex from Influenza A virus (A/Indonesia/5/2005(H5N1)))
- Hemagglutinin (57 kDa, Protein from Influenza A virus (A/Indonesia/5/2005(H5N1)))
- N-acetyl-alpha-neuraminic acid (309 Da, Ligand)
Cryo-EM structure of NRG1A(LRR) in complex with EDS1-SAG101-(ADPr-ATP)
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 8yn1
Q-score: 0.561
Huang S, Wang J, Song R, Jia A, Xiao Y, Sun Y, Wang L, Mahr D, Wu Z, Han Z, Li X, Parker JE, Chai J
Nature (2025) [ Pubmed: 39939760 DOI: doi:10.1038/s41586-024-08521-7 ]
- Senescence-associated carboxylesterase 101 (61 kDa, Protein from Arabidopsis thaliana)
- Probable disease resistance protein at5g66900 (46 kDa, Protein from Arabidopsis thaliana)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ternary complex of nrg1a(lrr) with eds1-sag101-(adpr-atp) (Complex from Arabidopsis)
- Adenosine-5-diphosphoribose (559 Da, Ligand)
- Protein eds1 (70 kDa, Protein from Arabidopsis thaliana)
Structure of the bacteriophage lambda tail tip complex
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8k35
Q-score: 0.539
Xiao H, Tan L, Tan Z, Zhang Y, Chen W, Li X, Song J, Cheng L, Liu H
PLoS Biol (2023) 21 pp. e3002441-e3002441 [ Pubmed: 38096144 DOI: doi:10.1371/journal.pbio.3002441 ]
- Tail tip protein m (12 kDa, Protein from Escherichia phage Lambda)
- Tape measure protein (92 kDa, Protein from Escherichia phage Lambda)
- Tail tip protein l (25 kDa, Protein from Escherichia phage Lambda)
- Tip attachment protein j (124 kDa, Protein from Escherichia phage Lambda)
- Escherichia phage lambda (Virus from Escherichia phage Lambda)
- Iron/sulfur cluster (351 Da, Ligand)
- Tail tip assembly protein i (23 kDa, Protein from Escherichia phage Lambda)
- Tail tube protein (25 kDa, Protein from Escherichia phage Lambda)
Resolution: 2.12 Å
EM Method: Single-particle
Fitted PDBs: 7xy9
Q-score: 0.714
Chen Q, Qu G, Li X, Feng M, Yang F, Li Y, Li J, Tong F, Song S, Wang Y, Sun Z, Luo G
Nat Commun (2023) 14 pp. 2117-2117 [ DOI: doi:10.1038/s41467-023-37921-y Pubmed: 37055470 ]
- Enzyme assembled gel (Complex from Thermoanaerobacter brockii)
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Nadp-dependent isopropanol dehydrogenase (38 kDa, Protein from Thermoanaerobacter brockii)
- Zinc ion (65 Da, Ligand)
the cryo-EM structure of human mini-SNAPc in complex with hU6-1 PSE
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 7xur
Q-score: 0.474
Sun J, Li X, Hou X, Cao S, Cao W, Zhang Y, Song J, Wang M, Wang H, Yan X, Li Z, Roeder RG, Wang W
Nat Commun (2022) 13 pp. 6871-6871 [ DOI: doi:10.1038/s41467-022-34639-1 Pubmed: 36369505 ]
- Dna (35-mer) (10 kDa, DNA from synthetic construct)
- Human mini-snapc (Complex from Homo sapiens)
- Snrna-activating protein complex subunit 3 (46 kDa, Protein from Homo sapiens)
- Snrna-activating protein complex subunit 4 (60 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Snrna-activating protein complex subunit 1 (33 kDa, Protein from Homo sapiens)
- Dna (Complex)
- The complex of human mini-snapc with hu6-1 pse (Complex)
- Dna (35-mer) (10 kDa, DNA from synthetic construct)
Induced alpha-2-macroglobulin monomer
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7voo
Q-score: 0.314
Huang X, Wang Y, Yu C, Zhang H, Ru Q, Li X, Song K, Zhou M, Zhu P
Sci China Life Sci (2022) 65 pp. 2491-2504 [ Pubmed: 35781771 DOI: doi:10.1007/s11427-022-2139-2 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Alpha-2-macroglobulin (145 kDa, Protein from Homo sapiens)
- Macroglobulin family protein (Tissue from Homo sapiens)
Cryo-EM structure of a membrane protein(WT)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7fjd
Q-score: 0.552
Chen Y, Zhu Y, Li X, Gao W, Zhen Z, Huang B, Ma Z, Zhang A, Song X, Ma Y, Guo C, Zhang F, Huang Z
Mol Cell (2022) 82 pp. 1278-1287.e5 [ Pubmed: 35271814 DOI: doi:10.1016/j.molcel.2022.02.017 ]
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
- Immune system (Complex from Homo sapiens)
- T cell receptor alpha variable 12-3,possible j 11 gene segment,t cell receptor alpha chain constant (30 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (18 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- T cell receptor beta variable 6-5,m1-specific t cell receptor beta chain,t cell receptor beta constant 2 (34 kDa, Protein from Homo sapiens)
Cryo-EM structure of a membrane protein(LL)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7fje
Q-score: 0.559
Chen Y, Zhu Y, Li X, Gao W, Zhen Z, Huang B, Ma Z, Zhang A, Song X, Ma Y, Guo C, Zhang F, Huang Z
Mol Cell (2022) 82 pp. 1278-1287.e5 [ Pubmed: 35271814 DOI: doi:10.1016/j.molcel.2022.02.017 ]
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
- T cell receptor beta variable 6-5,m1-specific t cell receptor beta chain,t cell receptor beta constant 2 (34 kDa, Protein from Homo sapiens)
- Immune system (Complex from Homo sapiens)
- T cell receptor alpha variable 12-3,possible j 11 gene segment,t cell receptor alpha chain constant (30 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (18 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
Cryo-EM structure of a membrane protein(CS)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7fjf
Q-score: 0.482
Chen Y, Zhu Y, Li X, Gao W, Zhen Z, Huang B, Ma Z, Zhang A, Song X, Ma Y, Guo C, Zhang F, Huang Z
Mol Cell (2022) 82 pp. 1278-1287.e5 [ Pubmed: 35271814 DOI: doi:10.1016/j.molcel.2022.02.017 ]
- T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
- Immune system (Complex from Homo sapiens)
- T cell receptor alpha variable 12-3,possible j 11 gene segment,t cell receptor alpha chain constant (30 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 zeta chain (18 kDa, Protein from Homo sapiens)
- T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)
- T cell receptor beta variable 6-5,m1-specific t cell receptor beta chain,t cell receptor beta constant 2 (34 kDa, Protein from Homo sapiens)
- Cholest-5-en-3-yl hydrogen sulfate (466 Da, Ligand)
BD23-Fab in complex with the S ectodomain trimer
Resolution: 3.84 Å
EM Method: Single-particle
Fitted PDBs: 7byr
Q-score: 0.441
Cao Y, Su B, Guo X, Sun W, Deng Y, Bao L, Zhu Q, Zhang X, Zheng Y, Geng C, Chai X, He R, Li X, Lv Q, Zhu H, Deng W, Xu Y, Wang Y, Qiao L, Tan Y, Song L, Wang G, Du X, Gao N, Liu J, Xiao J, Su XD, Du Z, Feng Y, Qin C, Qin C, Jin R, Xie XS
Cell (2020) 182 pp. 73-84.e16 [ DOI: doi:10.1016/j.cell.2020.05.025 Pubmed: 32425270 ]
- Spike glycoprotein (138 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ab23-fab-heavy chain (13 kDa, Protein from Homo sapiens)
- Ab23-fab-light chain (11 kDa, Protein from Homo sapiens)
- Ab23-fab (Complex from Homo sapiens)
- Sars-cov-2 spike glycoprotein (Complex from SARS coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bd23-fab in complex with the s ectodomain trimer (Complex)