Li Y, Shao K, Li Z, Zhu K, Gan BK, Shi J, Xiao Y, Luo M
Nat Commun (2024) 15 pp. 7090-7090 [ DOI: doi:10.1038/s41467-024-51600-6 Pubmed: 39154050 ]
- Dimeric structure of class iii lanthipeptide modification enzyme pnekc with one protomer in complex with substrate pnea and gtp (210 kDa, Complex from Streptococcus pneumoniae)
- Phosphate ion (94 Da, Ligand)
- Pnea lp (1 kDa, Protein from Streptococcus pneumoniae)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Protein kinase domain-containing protein (100 kDa, Protein from Streptococcus pneumoniae)
Li Y, Shao K, Li Z, Zhu K, Gan BK, Shi J, Xiao Y, Luo M
Nat Commun (2024) 15 pp. 7090-7090 [ DOI: doi:10.1038/s41467-024-51600-6 Pubmed: 39154050 ]
- Phosphate ion (94 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Dimeric structure of class iii lanthipeptide modification pnekc with gsp and pnea bound to one protomer. (210 kDa, Complex from Streptococcus pneumoniae)
- 5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
- Sapb/amfs family lantipeptide (4 kDa, Protein from Streptococcus pneumoniae)
- Protein kinase domain-containing protein (100 kDa, Protein from Streptococcus pneumoniae)
Cryo-EM structure of nucleotide-bound ComA with ZinC ion
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8k4b
Q-score: 0.297
Yu L, Xu X, Chua WZ, Feng H, Ser Z, Shao K, Shi J, Wang Y, Li Z, Sobota RM, Sham LT, Luo M
Nat Commun (2023) 14 pp. 7178-7178 [ Pubmed: 37935699 DOI: doi:10.1038/s41467-023-42852-9 ]
- Coma (Complex from Streptococcus pneumoniae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Competence factor transporting atp-binding protein/permease coma (80 kDa, Protein from Streptococcus pneumoniae D39)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of nucleotide-bound ComA E647Q mutant with Mg2+
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8k7a
Q-score: 0.235
Yu L, Xu X, Chua WZ, Feng H, Ser Z, Shao K, Shi J, Wang Y, Li Z, Sobota RM, Sham LT, Luo M
Nat Commun (2023) 14 pp. 7178-7178 [ Pubmed: 37935699 DOI: doi:10.1038/s41467-023-42852-9 ]
- Transport/processing atp-binding protein coma (80 kDa, Protein from Streptococcus pneumoniae R6)
- Coma (Complex from Streptococcus pneumoniae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
Cryo-EM structure of nucleotide-bound ComA at outward-facing state with EC gate closed conformation
Cryo-EM structure of nucleotide-bound ComA at outward-facing state with EC gate open conformation
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8hf5
Q-score: 0.501
Yu L, Xu X, Chua WZ, Feng H, Ser Z, Shao K, Shi J, Wang Y, Li Z, Sobota RM, Sham LT, Luo M
Nat Commun (2023) 14 pp. 7178-7178 [ Pubmed: 37935699 DOI: doi:10.1038/s41467-023-42852-9 ]
- Magnesium ion (24 Da, Ligand)
- Coma (Complex from Streptococcus pneumoniae D39)
- Transport/processing atp-binding protein coma (80 kDa, Protein from Streptococcus pneumoniae D39)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
Structure of COVID-19 RNA-dependent RNA polymerase bound to suramin
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 7d4f
Q-score: 0.608
Yin W, Luan X, Li Z, Zhou Z, Wang Q, Gao M, Wang X, Zhou F, Shi J, You E, Liu M, Wang Q, Jiang Y, Jiang H, Xiao G, Zhang L, Yu X, Zhang S, Eric Xu H
Nat Struct Mol Biol (2021) 28 pp. 319-325 [ DOI: doi:10.1038/s41594-021-00570-0 Pubmed: 33674802 ]
- Non-structural protein 8 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Non-structural protein 7 (9 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Covid-19 rdrp complex bound to suramin (Complex from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- 8-(3-(3-aminobenzamido)-4-methylbenzamido)naphthalene-1,3,5-trisulfonic acid (635 Da, Ligand)
- Rna-directed rna polymerase (107 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)