PSI-FCPI-L in Thalassiosira pseudonana
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8zeh
Q-score: 0.566
Feng Y, Li Z, Yang Y, Shen L, Li X, Liu X, Zhang X, Zhang J, Ren F, Wang Y, Liu C, Han G, Wang X, Kuang T, Shen JR, Wang W
J Integr Plant Biol (2024) [ Pubmed: 39670505 DOI: doi:10.1111/jipb.13816 ]
- Fucoxanthin chl a/c light-harvesting protein (19 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Tp-psar (9 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Beta-carotene (536 Da, Ligand)
- Fucoxanthin chlorophyll a/c light-harvesting protein (23 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Pt17531-like protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i iron-sulfur center (8 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Tp-redcap (20 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit ii (14 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chl a/c light-harvesting protein, major type (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Tp-lhcr20 (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Tp-lhcr18 (16 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit psa29 (13 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Tp-psi-fcpi-l (Complex from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chlorophyll a/c-binding protein lhcq8 (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chl a/c light-harvesting protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chlorophyll a/c light-harvesting protein (19 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chl a/c light-harvesting protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Phylloquinone (450 Da, Ligand)
- Fucoxanthin chl a/c light-harvesting protein, lhcr type (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit xi (15 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Fucoxanthin chlorophyll a/c light-harvesting protein, lhcr type (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll c1 (610 Da, Ligand)
- Photosystem i reaction center subunit iii (17 kDa, Protein from Thalassiosira pseudonana CCMP1335)
Tp-PSI-FCPI-S in Thalassiosira pseudonana
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8zet
Q-score: 0.485
Feng Y, Li Z, Yang Y, Shen L, Li X, Liu X, Zhang X, Zhang J, Ren F, Wang Y, Liu C, Han G, Wang X, Kuang T, Shen JR, Wang W
J Integr Plant Biol (2024) [ Pubmed: 39670505 DOI: doi:10.1111/jipb.13816 ]
- Tp-psar (9 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Beta-carotene (536 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Pt17531-like protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Tp-redcap (20 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit ii (14 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chl a/c light-harvesting protein, major type (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit psa29 (13 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chlorophyll a/c-binding protein lhcq8 (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chl a/c light-harvesting protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Phylloquinone (450 Da, Ligand)
- Tp-psi-fcpi-s (Complex from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit xi (15 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Iron/sulfur cluster (351 Da, Ligand)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Chlorophyll c1 (610 Da, Ligand)
- Photosystem i reaction center subunit iii (17 kDa, Protein from Thalassiosira pseudonana CCMP1335)
Structure of CasPi with guide RNA and target DNA
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 7yoj
Q-score: 0.361
Sun A, Li CP, Chen Z, Zhang S, Li DY, Yang Y, Li LQ, Zhao Y, Wang K, Li Z, Liu J, Liu S, Wang J, Liu JG
Cell Res (2023) 33 pp. 229-244 [ DOI: doi:10.1038/s41422-022-00771-2 Pubmed: 36650285 ]
- Caspi (177 kDa, Complex from Armatimonadetes bacterium)
- Dna (5'-d(p*cp*gp*gp*gp*ap*tp*gp*cp*cp*cp*ap*g)-3') (3 kDa, DNA from Armatimonadetes bacterium)
- Caspi (98 kDa, Protein from Armatimonadota bacterium)
- Rna (174-mer) (56 kDa, RNA from Armatimonadetes bacterium)
- Dna (30-mer) (9 kDa, DNA from Armatimonadetes bacterium)
RBD-1 of SARS-CoV-2 Beta spike in complex with S5D2 Fab
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wcr
Q-score: 0.354
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Light chain of s5d2 fab (Complex)
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s5d2 fab (Complex from Mus musculus)
- Rbd-1 of sars-cov-2 beta spike in complex with s5d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
- Sars-cov-2 spike protein (Complex from Mus musculus)
SARS-CoV-2 Beta spike in complex with one S5D2 Fab
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wcz
Q-score: 0.256
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Light chain of s5d2 fab (Complex)
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 beta spike in complex with one s5d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s5d2 fab (Complex from Mus musculus)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
- Sars-cov-2 spike protein (Complex from Mus musculus)
SARS-CoV-2 Beta spike in complex with two S5D2 Fabs
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7wd0
Q-score: 0.291
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Light chain of s5d2 fab (Complex)
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s5d2 fab (Complex from Mus musculus)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
- Sars-cov-2 beta spike in complex with two s5d2 fabs (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein (Complex from Mus musculus)
SARS-CoV-2 Beta spike in complex with three S5D2 Fabs
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wd7
Q-score: 0.22
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
- Heavy chain of s5d2 fab (Complex)
- Light chain of s5d2 fab (Complex from Mus musculus)
- Sars-cov-2 beta spike in complex with two s5d2 fabs (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein (Complex from Mus musculus)
SARS-CoV-2 Beta spike SD1 in complex with S3H3 Fab
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7wd8
Q-score: 0.28
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Sars-cov-2 beta spike in complex with s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s3h3 fab (Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Light chain of s3h3 fab (Complex from Mus musculus)
- Partial spike of sars-cov-2 beta variant (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s3h3 fab (23 kDa, Protein from Mus musculus)
- Light chain of s3h3 fab (23 kDa, Protein from Mus musculus)
- Sars-cov-2 spike protein (Complex from Mus musculus)
SARS-CoV-2 Beta spike in complex with three S3H3 Fabs
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7wd9
Q-score: 0.204
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Heavy chain of s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 beta spike in complex with s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s3h3 fab (23 kDa, Protein from Mus musculus)
- Light chain of s3h3 fab (Complex)
- Light chain of s3h3 fab (23 kDa, Protein from Mus musculus)
SARS-CoV-2 Beta spike in complex with two S3H3 Fabs
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7wdf
Q-score: 0.188
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Heavy chain of s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 beta spike in complex with s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s3h3 fab (23 kDa, Protein from Mus musculus)
- Light chain of s3h3 fab (Complex)
- Light chain of s3h3 fab (23 kDa, Protein from Mus musculus)