Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8yb6
Q-score: 0.512
Zhang C, Chen F, Wang F, Xu H, Xue J, Li Z
Mol Cell (2024) 84 pp. 3141- [ Pubmed: 39047725 DOI: doi:10.1016/j.molcel.2024.06.033 ]
- Crispr system cascade subunit casc (41 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Zinc ion (65 Da, Ligand)
- 61-nt crrna (19 kDa, RNA from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr system cascade subunit casd (43 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Type i-ehnh cascade complex (Complex from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated protein cse2 (crispr_cse2) (20 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated protein cse1 (crispr_cse1) (60 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated endoribonuclease cse3 (31 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
Type I-FHNH Cascade-dsDNA intermediate complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8ydb
Q-score: 0.443
Zhang C, Chen F, Wang F, Xu H, Xue J, Li Z
Mol Cell (2024) 84 pp. 3141- [ Pubmed: 39047725 DOI: doi:10.1016/j.molcel.2024.06.033 ]
- Cas8f fusion with hnh (39 kDa, Protein from Selenomonas sp.)
- Type i-fhnh cascade-dsdna intermediate complex (Complex from Selenomonas sp.)
- Cas5f (28 kDa, Protein from Selenomonas sp.)
- Nts (3 kDa, Macromolecule from Selenomonas sp.)
- Cas6f (20 kDa, Protein from Selenomonas sp.)
- Ts (10 kDa, Macromolecule from Selenomonas sp.)
- Cas7f (38 kDa, Protein from Selenomonas sp.)
- 60-nt crrna (19 kDa, RNA from Selenomonas sp.)
Type I-FHNH Cascade-dsDNA R-loop complex
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8yeo
Q-score: 0.432
Zhang C, Chen F, Wang F, Xu H, Xue J, Li Z
Mol Cell (2024) 84 pp. 3141- [ Pubmed: 39047725 DOI: doi:10.1016/j.molcel.2024.06.033 ]
- Cas8f fusion with hnh (39 kDa, Protein from Selenomonas sp.)
- Cas5f (28 kDa, Protein from Selenomonas sp.)
- Nts (3 kDa, Macromolecule from Selenomonas sp.)
- Cas6f (20 kDa, Protein from Selenomonas sp.)
- Type i-fhnh cascade-dsdna r-loop complex (Complex from Selenomonas sp.)
- Cas7f (38 kDa, Protein from Selenomonas sp.)
- 60-nt crrna (19 kDa, RNA from Selenomonas sp.)
- Ts (15 kDa, Macromolecule from Selenomonas sp.)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8yh9
Q-score: 0.406
Zhang C, Chen F, Wang F, Xu H, Xue J, Li Z
Mol Cell (2024) 84 pp. 3141- [ Pubmed: 39047725 DOI: doi:10.1016/j.molcel.2024.06.033 ]
- Type i-fhnh cascade complex (Complex from Selenomonas sp.)
- Cas8f fusion with hnh (39 kDa, Protein from Selenomonas sp.)
- Cas5f (28 kDa, Protein from Selenomonas sp.)
- Cas6f (20 kDa, Protein from Selenomonas sp.)
- Cas7f (38 kDa, Protein from Selenomonas sp.)
- 60-nt crrna (19 kDa, RNA from Selenomonas sp.)
Type I-EHNH Cascade-ssDNA complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8yha
Q-score: 0.508
Zhang C, Chen F, Wang F, Xu H, Xue J, Li Z
Mol Cell (2024) 84 pp. 3141- [ Pubmed: 39047725 DOI: doi:10.1016/j.molcel.2024.06.033 ]
- Crispr system cascade subunit casc (41 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Zinc ion (65 Da, Ligand)
- Dna/rna (47-mer) (17 kDa, Macromolecule from Candidatus Cloacimonadota bacterium)
- Type i-ehnh cascade-ssdna complex (Complex from Candidatus Cloacimonadota bacterium)
- Crispr system cascade subunit casd (43 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- 61-nt crrna (19 kDa, RNA from Candidatus Cloacimonadota bacterium)
- Crispr-associated protein cse2 (crispr_cse2) (20 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated protein cse1 (crispr_cse1) (60 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated endoribonuclease cse3 (31 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
Cryo-EM structure of a protein-RNA complex
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 8wce
Q-score: 0.51
Chen F, Zhang C, Xue J, Wang F, Li Z
Nucleic Acids Res (2024) 52 pp. 7279-7291 [ Pubmed: 38661236 DOI: doi:10.1093/nar/gkae324 ]
- Rna (31-mer) (9 kDa, RNA from synthetic construct)
- Uncharacterized protein (130 kDa, Protein from unidentified)
- Protein-rna complex (Complex from unidentified)
- Magnesium ion (24 Da, Ligand)
- Rna (66-mer) (21 kDa, RNA from synthetic construct)
Cryo-EM structure of Cas13h1-crRNA binary complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8wcs
Q-score: 0.47
Chen F, Zhang C, Xue J, Wang F, Li Z
Nucleic Acids Res (2024) 52 pp. 7279-7291 [ Pubmed: 38661236 DOI: doi:10.1093/nar/gkae324 ]
- Rna (Complex)
- Rna-protein complex (Complex from unidentified)
- 66-nt crrna (21 kDa, RNA from synthetic construct)
- Pro (Complex)
- Cas13h1 (130 kDa, Protein from unidentified)
- Magnesium ion (24 Da, Ligand)
Cryo-EM structure of PfAgo-guide DNA-target DNA complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8jpx
Q-score: 0.575
Wang L, Chen W, Zhang C, Xie X, Huang F, Chen M, Mao W, Yu N, Wei Q, Ma L, Li Z
Mol Cell (2024) 84 pp. 675-686.e4 [ Pubmed: 38295801 DOI: doi:10.1016/j.molcel.2024.01.004 ]
- Guide dna (5 kDa, DNA from Pyrococcus furiosus DSM 3638)
- Protein argonaute (90 kDa, Protein from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
- Excess dna (1 kDa, DNA from Pyrococcus furiosus DSM 3638)
- Cryo-em structure of a pfago-guide dna-target dna complex (Complex from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1))
- Magnesium ion (24 Da, Ligand)
- Target dna (5 kDa, DNA from Pyrococcus furiosus DSM 3638)
Cryo-EM structure of TtdAgo-guide DNA-target DNA complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8wd8
Q-score: 0.593
Wang L, Chen W, Zhang C, Xie X, Huang F, Chen M, Mao W, Yu N, Wei Q, Ma L, Li Z
Mol Cell (2024) 84 pp. 675-686.e4 [ Pubmed: 38295801 DOI: doi:10.1016/j.molcel.2024.01.004 ]
- Dna binding protein (Complex)
- Dna (Complex)
- Cryo-em structure of ttdago-guide dna-target dna complex (Complex from Thermus thermophilus)
- Guide dna (5 kDa, DNA from Thermus thermophilus)
- Zinc ion (65 Da, Ligand)
- Target dna (5 kDa, DNA from Thermus thermophilus)
- Argonaute family protein (87 kDa, Protein from Thermococcus thioreducens)
- Magnesium ion (24 Da, Ligand)
Cryo-EM structure of pseudoallergen receptor MRGPRX2 complex with C48/80, state2
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7vdh
Q-score: 0.53
Yang F, Guo L, Li Y, Wang G, Wang J, Zhang C, Fang GX, Chen X, Liu L, Yan X, Liu Q, Qu C, Xu Y, Xiao P, Zhu Z, Li Z, Zhou J, Yu X, Gao N, Sun JP
Nature (2021) 600 pp. 164-169 [ DOI: doi:10.1038/s41586-021-04077-y Pubmed: 34789875 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (39 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Mas-related g-protein coupled receptor member x2 (37 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (6 kDa, Protein from Homo sapiens)
- 2-[4-methoxy-3-[[2-methoxy-3-[[2-methoxy-5-[2-(methylamino)ethyl]phenyl]methyl]-5-[2-(methylamino)ethyl]phenyl]methyl]phenyl]-~{n}-methyl-ethanamine (519 Da, Ligand)
- Scfv (30 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Cryo-em structure of pseudoallergen receptor mrgprx2 complex with c48/80, state2 (Complex from Homo sapiens)