Cryo-EM structure of the NmeCas9-sgRNA-AcrIIC4 ternary complex
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 8ja0
Q-score: 0.442
Li X, Liao F, Gao J, Song G, Zhang C, Ji N, Wang X, Wen J, He J, Wei Y, Zhang H, Li Z, Yu G, Yin H
Nucleic Acids Res (2023) 51 pp. 9442-9451 [ DOI: doi:10.1093/nar/gkad669 Pubmed: 37587688 ]
- Crispr-associated endonuclease cas9 (124 kDa, Protein from Neisseria meningitidis)
- Uncharacterized protein (9 kDa, Protein from Haemophilus parainfluenzae)
- Rna (117-mer) (37 kDa, RNA from Neisseria meningitidis)
- A protein complex (Complex from Neisseria meningitidis)
Cryo-EM structure of TIR-APAZ/Ago-gRNA-DNA complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8i87
Q-score: 0.53
Wang X, Li X, Yu G, Zhang L, Zhang C, Wang Y, Liao F, Wen Y, Yin H, Liu X, Wei Y, Li Z, Deng Z, Zhang H
Cell Res (2023) 33 pp. 699-711 [ DOI: doi:10.1038/s41422-023-00839-7 Pubmed: 37311833 ]
- Tir domain-containing protein (53 kDa, Protein from Maribacter polysiphoniae)
- Piwi domain-containing protein (58 kDa, Protein from Maribacter polysiphoniae)
- Dna (5'-d(p*tp*ap*tp*ap*cp*ap*ap*cp*cp*tp*ap*cp*tp*ap*cp*cp*tp*cp*a)-3') (5 kDa, DNA from Maribacter polysiphoniae)
- Tir-apaz/ago-grna-dna complex (Complex from Maribacter polysiphoniae)
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(p*up*gp*ap*gp*gp*up*ap*gp*up*ap*gp*gp*up*up*gp*up*ap*up*a)-3') (6 kDa, RNA from Maribacter polysiphoniae)
Cryo-EM structure of TIR-APAZ/Ago-gRNA complex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8i88
Q-score: 0.433
Wang X, Li X, Yu G, Zhang L, Zhang C, Wang Y, Liao F, Wen Y, Yin H, Liu X, Wei Y, Li Z, Deng Z, Zhang H
Cell Res (2023) 33 pp. 699-711 [ DOI: doi:10.1038/s41422-023-00839-7 Pubmed: 37311833 ]
- Cryo-em structure of tir-apaz/ago-grna complex (Complex from Maribacter polysiphoniae)
- Rna (5'-r(p*gp*a)-3') (629 Da, RNA from Maribacter polysiphoniae)
- Tir domain-containing protein (53 kDa, Protein from Maribacter polysiphoniae)
- Piwi domain-containing protein (58 kDa, Protein from Maribacter polysiphoniae)
Cryo-EM structure of the target ssDNA-bound SIR2-APAZ/Ago-gRNA quaternary complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8in8
Q-score: 0.504
Wang X, Li X, Yu G, Zhang L, Zhang C, Wang Y, Liao F, Wen Y, Yin H, Liu X, Wei Y, Li Z, Deng Z, Zhang H
Cell Res (2023) 33 pp. 699-711 [ DOI: doi:10.1038/s41422-023-00839-7 Pubmed: 37311833 ]
- Dna (5'-d(p*ap*ap*cp*gp*ap*cp*gp*tp*cp*tp*ap*ap*gp*ap*ap*ap*cp*cp*ap*tp*tp*ap*a)-3') (7 kDa, DNA from Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA))
- Cryo-em structure of the target ssdna-bound sir2-apaz/ago-grna quaternary complex (Complex from Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA))
- Rna (5'-r(p*ap*up*ap*ap*up*gp*gp*up*up*up*cp*up*up*ap*gp*ap*cp*gp*up*cp*gp*up*up*u)-3') (7 kDa, RNA from Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA))
- Sir2 superfamily protein (66 kDa, Protein from Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA))
- Magnesium ion (24 Da, Ligand)
- Piwi domain protein (53 kDa, Protein from Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA))