Cryo-EM structure of urea bound human urea transporter A2.
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8xda
Q-score: 0.54
Huang SM, Huang ZZ, Liu L, Xiong MY, Zhang C, Cai BY, Wang MW, Cai K, Jia YL, Wang JL, Zhang MH, Xie YH, Li M, Zhang H, Weng CH, Wen X, Li Z, Sun Y, Yi F, Yang Z, Xiao P, Yang F, Yu X, Tie L, Yang BX, Sun JP
Nat Commun (2024) 15 pp. 10226-10226 [ Pubmed: 39587082 DOI: doi:10.1038/s41467-024-54305-y ]
- Homotrimer complex of human urea transporter (Complex from Homo sapiens)
- Urea transporter 2 (43 kDa, Protein from Homo sapiens)
- Urea (60 Da, Ligand)
- Water (18 Da, Ligand)
Cryo-EM structure of human urea transporter A2.
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8xdd
Q-score: 0.524
Huang SM, Huang ZZ, Liu L, Xiong MY, Zhang C, Cai BY, Wang MW, Cai K, Jia YL, Wang JL, Zhang MH, Xie YH, Li M, Zhang H, Weng CH, Wen X, Li Z, Sun Y, Yi F, Yang Z, Xiao P, Yang F, Yu X, Tie L, Yang BX, Sun JP
Nat Commun (2024) 15 pp. 10226-10226 [ Pubmed: 39587082 DOI: doi:10.1038/s41467-024-54305-y ]
- Homotrimer complex of human urea transporter (Complex from Homo sapiens)
- Urea transporter 2 (43 kDa, Protein from Homo sapien)
- 1-(3-methoxyphenyl)methanamine (137 Da, Ligand)
- 8-hydroxyquinoline-2-carboxylic acid (189 Da, Ligand)
Cryo-EM structure of zebrafish urea transporter.
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8xdh
Q-score: 0.57
Huang SM, Huang ZZ, Liu L, Xiong MY, Zhang C, Cai BY, Wang MW, Cai K, Jia YL, Wang JL, Zhang MH, Xie YH, Li M, Zhang H, Weng CH, Wen X, Li Z, Sun Y, Yi F, Yang Z, Xiao P, Yang F, Yu X, Tie L, Yang BX, Sun JP
Nat Commun (2024) 15 pp. 10226-10226 [ Pubmed: 39587082 DOI: doi:10.1038/s41467-024-54305-y ]
- Homotrimer complex of human urea transporter (Complex from Danio rerio)
- Urea (60 Da, Ligand)
- Urea transporter (47 kDa, Protein from Danio rerio)
Cryo-EM structure of a bacterial protein
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8wiv
Q-score: 0.411
Yu G, Liao F, Li X, Li Z, Zhang H
To Be Published
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Cryo-em structure of a bacterial protein (400 kDa, Complex from Paenibacillus sp. 453mf)
- Helicase hera central domain-containing protein (77 kDa, Protein from Paenibacillus sp. 453mf)
Cryo-EM structure of a bacterial protein
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 8wj3
Q-score: 0.384
Yu G, Liao F, Li X, Li Z, Zhang H
To Be Published
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Cryo-em structure of a bacterial protein (400 kDa, Complex from Paenibacillus sp. 453mf)
- Helicase hera central domain-containing protein (77 kDa, Protein from Paenibacillus sp. 453mf)
Cryo-EM structure of a bacterial protein
Yu G, Liao F, Li X, Li Z, Zhang H
To Be Published
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Cryo-em structure of a bacterial protein (400 kDa, Complex from Paenibacillus sp. 453mf)
- Helicase hera central domain-containing protein (77 kDa, Protein from Paenibacillus sp. 453mf)
Cryo-EM structure of Cas12g-sgRNA binary complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8i3q
Q-score: 0.461
Liu M, Li Z, Chen J, Lin J, Lu Q, Ye Y, Zhang H, Zhang B, Ouyang S
PLoS Genet (2023) 19 pp. e1010930-e1010930 [ Pubmed: 37729124 DOI: doi:10.1371/journal.pgen.1010930 ]
- Rna (Complex)
- Zinc ion (65 Da, Ligand)
- Rna (139-mer) (44 kDa, RNA from Escherichia coli)
- Cas12g (Complex)
- Cas12g-sgrna binary complex (Complex from Escherichia coli)
- Cas12g (89 kDa, Protein from Escherichia coli)
Cryo-EM structure of TIR-APAZ/Ago-gRNA-DNA complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8i87
Q-score: 0.53
Wang X, Li X, Yu G, Zhang L, Zhang C, Wang Y, Liao F, Wen Y, Yin H, Liu X, Wei Y, Li Z, Deng Z, Zhang H
Cell Res (2023) 33 pp. 699-711 [ DOI: doi:10.1038/s41422-023-00839-7 Pubmed: 37311833 ]
- Tir domain-containing protein (53 kDa, Protein from Maribacter polysiphoniae)
- Piwi domain-containing protein (58 kDa, Protein from Maribacter polysiphoniae)
- Dna (5'-d(p*tp*ap*tp*ap*cp*ap*ap*cp*cp*tp*ap*cp*tp*ap*cp*cp*tp*cp*a)-3') (5 kDa, DNA from Maribacter polysiphoniae)
- Tir-apaz/ago-grna-dna complex (Complex from Maribacter polysiphoniae)
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(p*up*gp*ap*gp*gp*up*ap*gp*up*ap*gp*gp*up*up*gp*up*ap*up*a)-3') (6 kDa, RNA from Maribacter polysiphoniae)
Cryo-EM structure of the target ssDNA-bound SIR2-APAZ/Ago-gRNA quaternary complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8in8
Q-score: 0.504
Wang X, Li X, Yu G, Zhang L, Zhang C, Wang Y, Liao F, Wen Y, Yin H, Liu X, Wei Y, Li Z, Deng Z, Zhang H
Cell Res (2023) 33 pp. 699-711 [ DOI: doi:10.1038/s41422-023-00839-7 Pubmed: 37311833 ]
- Dna (5'-d(p*ap*ap*cp*gp*ap*cp*gp*tp*cp*tp*ap*ap*gp*ap*ap*ap*cp*cp*ap*tp*tp*ap*a)-3') (7 kDa, DNA from Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA))
- Cryo-em structure of the target ssdna-bound sir2-apaz/ago-grna quaternary complex (Complex from Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA))
- Rna (5'-r(p*ap*up*ap*ap*up*gp*gp*up*up*up*cp*up*up*ap*gp*ap*cp*gp*up*cp*gp*up*up*u)-3') (7 kDa, RNA from Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA))
- Sir2 superfamily protein (66 kDa, Protein from Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA))
- Magnesium ion (24 Da, Ligand)
- Piwi domain protein (53 kDa, Protein from Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA))
cryo-EM structure of a bacterial dioxygenase
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 8h2t
Q-score: 0.596
Ma Y, Li X, Wang F, Zhang L, Zhou S, Che X, Yu D, Liu X, Li Z, Sun H, Yu G, Zhang H
PLoS Biol (2023) 21 pp. e3002189-e3002189 [ DOI: doi:10.1371/journal.pbio.3002189 Pubmed: 37459330 ]
- Rieske (2fe-2s) domain protein (49 kDa, Protein from Variovorax paradoxus)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Enzyme complex (Complex from Variovorax paradoxus)
- Aromatic-ring-hydroxylating dioxygenase beta subunit (18 kDa, Protein from Variovorax paradoxus)
- 1h-indol-3-ylacetic acid (175 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)