Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8iwh
Q-score: 0.541
Feng Y, Li Z, Li X, Shen L, Liu X, Zhou C, Zhang J, Sang M, Han G, Yang W, Kuang T, Wang W, Shen JR
Sci Adv (2023) 9 pp. eadi8446-eadi8446 [ DOI: doi:10.1126/sciadv.adi8446 Pubmed: 37878698 ]
- Chlorophyll c2 (608 Da, Ligand)
- Structure of psii-fcpii supercomplex containing monomeric lhcx and dimeric fcpii from thalassiosira pseudonana (Complex from Thalassiosira pseudonana)
- Photosystem ii reaction center protein z (6 kDa, Protein from Thalassiosira pseudonana)
- Fucoxanthin chlorophyll a/c protein 6 (20 kDa, Protein from Thalassiosira pseudonana)
- Beta-carotene (536 Da, Ligand)
- Photosystem ii cp43 reaction center protein (51 kDa, Protein from Thalassiosira pseudonana)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Photosystem ii protein d1 (36 kDa, Protein from Thalassiosira pseudonana)
- Fucoxanthin chlorophyll a/c light-harvesting protein, major type (20 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center protein t (3 kDa, Protein from Thalassiosira pseudonana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii d2 protein (39 kDa, Protein from Thalassiosira pseudonana)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii subunit, psbw (6 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Thalassiosira pseudonana)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Cytochrome b559 subunit beta (4 kDa, Protein from Thalassiosira pseudonana)
- Ps ii complex 12 kda extrinsic protein (15 kDa, Protein from Thalassiosira pseudonana)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Photosystem ii subunit, psbq. (22 kDa, Protein from Thalassiosira pseudonana)
- Oxygen-evolving enhancer protein 1 (32 kDa, Protein from Thalassiosira pseudonana)
- Cytochrome c-550 (17 kDa, Protein from Thalassiosira pseudonana)
- Pheophytin a (871 Da, Ligand)
- Fucoxanthin-chlorophyll a-c binding protein, plastid (21 kDa, Protein from Thalassiosira pseudonana)
- Fucoxanthin chlorophyll a/c protein 5 (21 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center protein i (3 kDa, Protein from Thalassiosira pseudonana)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Photosystem ii subunit, psbn. (2 kDa, Protein from Thalassiosira pseudonana)
- Fe (ii) ion (55 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center protein h (7 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center protein l (4 kDa, Protein from Thalassiosira pseudonana)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein j (4 kDa, Protein from Thalassiosira pseudonana)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Fucoxanthin chlorophyll a/c protein-li818 clade (21 kDa, Protein from Thalassiosira pseudonana)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Photosystem ii reaction center x protein (3 kDa, Protein from Thalassiosira pseudonana)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Photosystem ii reaction center m protein, plastid (12 kDa, Protein from Thalassiosira pseudonana)
- Chloride ion (35 Da, Ligand)
- Chlorophyll c1 (610 Da, Ligand)
- Fucoxanthin chl a/c protein, lhca clade (24 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii psb31 protein domain-containing protein (18 kDa, Protein from Thalassiosira pseudonana)
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 8j0d
Q-score: 0.498
Feng Y, Li Z, Li X, Shen L, Liu X, Zhou C, Zhang J, Sang M, Han G, Yang W, Kuang T, Wang W, Shen JR
Sci Adv (2023) 9 pp. eadi8446-eadi8446 [ DOI: doi:10.1126/sciadv.adi8446 Pubmed: 37878698 ]
- Fucoxanthin chlorophyll a/c protein 6 (17 kDa, Protein from Thalassiosira pseudonana)
- Chlorophyll c2 (608 Da, Ligand)
- Fucoxanthin chlorophyll a/c protein 5 (18 kDa, Protein from Thalassiosira pseudonana)
- Fucoxanthin-chlorophyll a-c binding protein, plastid (17 kDa, Protein from Thalassiosira pseudonana)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Chlorophyll c1 (610 Da, Ligand)
- M1 local refinement in the psii-fcpii from the thalassiosira pseudonana at 3.19 angstrom (Complex from Thalassiosira pseudonana)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Fucoxanthin chl a/c protein, lhca clade (24 kDa, Protein from Thalassiosira pseudonana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
Cryo-EM structure of the receptor-activated TRPC5 ion channel
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 6aei
Q-score: 0.484
Duan J, Li J, Chen GL, Ge Y, Liu J, Xie K, Peng X, Zhou W, Zhong J, Zhang Y, Xu J, Xue C, Liang B, Zhu L, Liu W, Zhang C, Tian XL, Wang J, Clapham DE, Zeng B, Li Z, Zhang J
Sci Adv (2019) 5 [ Pubmed: 31355338 DOI: doi:10.1126/sciadv.aaw7935 ]
- Short transient receptor potential channel 5 (88 kDa, Protein from Mus musculus)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Mouse trpc5 (Complex from Mus musculus)
- Sodium ion (22 Da, Ligand)
- 2-(hexadecanoyloxy)-1-[(phosphonooxy)methyl]ethyl hexadecanoate (648 Da, Ligand)
The structure of CVA10 virus mature virion
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6acu
Q-score: 0.086
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Zhou ZH, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp4 (7 kDa, Protein from Coxsackievirus A10)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Sphingosine (299 Da, Ligand)
- Vp2 (27 kDa, Protein from Coxsackievirus A10)
The structure of CVA10 virus procapsid particle
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6acw
Q-score: 0.476
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Vp0 (35 kDa, Protein from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
The structure of CVA10 virus A-particle
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6acy
Q-score: 0.543
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp2 (27 kDa, Protein from Coxsackievirus A10)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
The structure of CVA10 virus A-particle from its complex with Fab 2G8
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6acz
Q-score: 0.466
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp2 (27 kDa, Protein from Coxsackievirus A10)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
The structure of CVA10 mature virion in complex with Fab 2G8
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6ad0
Q-score: 0.498
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp4 (7 kDa, Protein from Coxsackievirus A10)
- Vl of fab 2g8 (12 kDa, Protein from Mus musculus)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Vh of fab 2g8 (13 kDa, Protein from Mus musculus)
- Sphingosine (299 Da, Ligand)
- Vp2 (27 kDa, Protein from Coxsackievirus A10)
The structure of CVA10 procapsid from its complex with Fab 2G8
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6ad1
Q-score: 0.481
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Vp0 (35 kDa, Protein from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)