Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8iwh
Q-score: 0.541
Feng Y, Li Z, Li X, Shen L, Liu X, Zhou C, Zhang J, Sang M, Han G, Yang W, Kuang T, Wang W, Shen JR
Sci Adv (2023) 9 pp. eadi8446-eadi8446 [ DOI: doi:10.1126/sciadv.adi8446 Pubmed: 37878698 ]
- Cytochrome c-550 (17 kDa, Protein from Thalassiosira pseudonana)
- Structure of psii-fcpii supercomplex containing monomeric lhcx and dimeric fcpii from thalassiosira pseudonana (Complex from Thalassiosira pseudonana)
- Photosystem ii reaction center protein h (7 kDa, Protein from Thalassiosira pseudonana)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Thalassiosira pseudonana)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem ii cp43 reaction center protein (51 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii protein d1 (36 kDa, Protein from Thalassiosira pseudonana)
- Fucoxanthin-chlorophyll a-c binding protein, plastid (21 kDa, Protein from Thalassiosira pseudonana)
- Bicarbonate ion (61 Da, Ligand)
- Chlorophyll c1 (610 Da, Ligand)
- Fucoxanthin chlorophyll a/c protein-li818 clade (21 kDa, Protein from Thalassiosira pseudonana)
- Fe (ii) ion (55 Da, Ligand)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii subunit, psbw (6 kDa, Protein from Thalassiosira pseudonana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll c2 (608 Da, Ligand)
- Photosystem ii psb31 protein domain-containing protein (18 kDa, Protein from Thalassiosira pseudonana)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Photosystem ii d2 protein (39 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center protein i (3 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center x protein (3 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center protein j (4 kDa, Protein from Thalassiosira pseudonana)
- Fucoxanthin chlorophyll a/c protein 6 (20 kDa, Protein from Thalassiosira pseudonana)
- Chloride ion (35 Da, Ligand)
- Fucoxanthin chlorophyll a/c protein 5 (21 kDa, Protein from Thalassiosira pseudonana)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Pheophytin a (871 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii subunit, psbq. (22 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Thalassiosira pseudonana)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Ps ii complex 12 kda extrinsic protein (15 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii subunit, psbn. (2 kDa, Protein from Thalassiosira pseudonana)
- Fucoxanthin chlorophyll a/c light-harvesting protein, major type (20 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center protein k (4 kDa, Protein from Thalassiosira pseudonana)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem ii reaction center protein t (3 kDa, Protein from Thalassiosira pseudonana)
- Fucoxanthin chl a/c protein, lhca clade (24 kDa, Protein from Thalassiosira pseudonana)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center m protein, plastid (12 kDa, Protein from Thalassiosira pseudonana)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Thalassiosira pseudonana)
- Chlorophyll a (893 Da, Ligand)
- Oxygen-evolving enhancer protein 1 (32 kDa, Protein from Thalassiosira pseudonana)
- Cytochrome b559 subunit beta (4 kDa, Protein from Thalassiosira pseudonana)
- Ca-mn4-o5 cluster (339 Da, Ligand)
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 8j0d
Q-score: 0.498
Feng Y, Li Z, Li X, Shen L, Liu X, Zhou C, Zhang J, Sang M, Han G, Yang W, Kuang T, Wang W, Shen JR
Sci Adv (2023) 9 pp. eadi8446-eadi8446 [ DOI: doi:10.1126/sciadv.adi8446 Pubmed: 37878698 ]
- Chlorophyll c1 (610 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Fucoxanthin-chlorophyll a-c binding protein, plastid (17 kDa, Protein from Thalassiosira pseudonana)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Fucoxanthin chlorophyll a/c protein 6 (17 kDa, Protein from Thalassiosira pseudonana)
- Fucoxanthin chl a/c protein, lhca clade (24 kDa, Protein from Thalassiosira pseudonana)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- M1 local refinement in the psii-fcpii from the thalassiosira pseudonana at 3.19 angstrom (Complex from Thalassiosira pseudonana)
- Chlorophyll c2 (608 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Fucoxanthin chlorophyll a/c protein 5 (18 kDa, Protein from Thalassiosira pseudonana)
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 7dnh
Q-score: 0.403
He M, Chi X, Zha Z, Li Y, Chen J, Huang Y, Huang S, Yu M, Wang Z, Song S, Liu X, Wei S, Li Z, Li T, Wang Y, Yu H, Zhao Q, Zhang J, Zheng Q, Gu Y, Li S, Xia N
J Virol (2021) 95 [ DOI: doi:10.1128/JVI.01587-20 Pubmed: 33472937 ]
- Major capsid protein l1 (59 kDa, Protein from Human papillomavirus type 58)
- Human papillomavirus type 58 in complexed with the fab fragment of 2h3 (Complex from Human papillomavirus type 58)
- The heavy chain of 2h3 fab fragment (23 kDa, Protein from Mus musculus)
- The light chain of 2h3 fab fragment (23 kDa, Protein from Mus musculus)
- Mus musculus (Complex)
- Human papillomavirus type 58 (Complex from Mus musculus)
Resolution: 6.41 Å
EM Method: Single-particle
Fitted PDBs: 7dnk
Q-score: 0.184
He M, Chi X, Zha Z, Li Y, Chen J, Huang Y, Huang S, Yu M, Wang Z, Song S, Liu X, Wei S, Li Z, Li T, Wang Y, Yu H, Zhao Q, Zhang J, Zheng Q, Gu Y, Li S, Xia N
J Virol (2021) 95 [ DOI: doi:10.1128/JVI.01587-20 Pubmed: 33472937 ]
- Fab fragment of 5g9 (Complex from Human papillomavirus type 58)
- Major capsid protein l1 (59 kDa, Protein from Human papillomavirus type 58)
- 2-fold sub-articles refinement of human papillomavirus type 58 pseudpvirus in complexed with the fab fragment of 5g9 (Complex from Mus musculus)
- Human papillomavirus type 58 pseudpvirus (Complex)
- The heavy chain of 5g9 fab fragment (22 kDa, Protein from Mus musculus)
- The light chain of 5g9 fab fragment (23 kDa, Protein from Mus musculus)
Resolution: 4.19 Å
EM Method: Single-particle
Fitted PDBs: 7dnl
Q-score: 0.339
He M, Chi X, Zha Z, Li Y, Chen J, Huang Y, Huang S, Yu M, Wang Z, Song S, Liu X, Wei S, Li Z, Li T, Wang Y, Yu H, Zhao Q, Zhang J, Zheng Q, Gu Y, Li S, Xia N
J Virol (2021) 95 [ DOI: doi:10.1128/JVI.01587-20 Pubmed: 33472937 ]
- Major capsid protein l1 (59 kDa, Protein from Human papillomavirus type 58)
- The light chain of a4b4 fab fragment (24 kDa, Protein from Mus musculus)
- The heavy chain of 2h3 fab fragment (23 kDa, Protein from Mus musculus)
- Human papillomavirus type 58 (Complex)
- Human papillomavirus type 58 in complexed with the fab fragment of a4b4 (Complex from Mus musculus)
- Fab fragment of a4b4 (Complex from Human papillomavirus type 58)
Cryo-EM structure of the receptor-activated TRPC5 ion channel
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 6aei
Q-score: 0.484
Duan J, Li J, Chen GL, Ge Y, Liu J, Xie K, Peng X, Zhou W, Zhong J, Zhang Y, Xu J, Xue C, Liang B, Zhu L, Liu W, Zhang C, Tian XL, Wang J, Clapham DE, Zeng B, Li Z, Zhang J
Sci Adv (2019) 5 [ DOI: doi:10.1126/sciadv.aaw7935 Pubmed: 31355338 ]
- Sodium ion (22 Da, Ligand)
- Mouse trpc5 (Complex from Mus musculus)
- 2-(hexadecanoyloxy)-1-[(phosphonooxy)methyl]ethyl hexadecanoate (648 Da, Ligand)
- Short transient receptor potential channel 5 (88 kDa, Protein from Mus musculus)
- Cholesterol hemisuccinate (486 Da, Ligand)
3.7 angstrom cryoEM structure of full length human TRPM4
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6bwi
Q-score: 0.414
Duan J, Li Z, Li J, Santa-Cruz A, Sanchez-Martinez S, Zhang J, Clapham DE
PNAS (2018) 115 pp. 2377-2382 [ DOI: doi:10.1073/pnas.1722038115 Pubmed: 29463718 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Transient receptor potential cation channel subfamily m member 4 (104 kDa, Protein from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Human full length trpm4 (Complex from Mus musculus)
The structure of CVA10 virus mature virion
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6acu
Q-score: 0.086
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Zhou ZH, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ DOI: doi:10.1126/sciadv.aat7459 Pubmed: 30255146 ]
- Vp2 (27 kDa, Protein from Coxsackievirus A10)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Vp4 (7 kDa, Protein from Coxsackievirus A10)
- Sphingosine (299 Da, Ligand)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
The structure of CVA10 virus procapsid particle
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6acw
Q-score: 0.476
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ DOI: doi:10.1126/sciadv.aat7459 Pubmed: 30255146 ]
- Vp0 (35 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
The structure of CVA10 virus A-particle
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6acy
Q-score: 0.543
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ DOI: doi:10.1126/sciadv.aat7459 Pubmed: 30255146 ]
- Vp2 (27 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)