Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7f0d
Q-score: 0.473
Zhang W, Li Z, Sun Y, Cui P, Liang J, Xing Q, Wu J, Xu Y, Zhang W, Zhang Y, He L, Gao N
Emerg Microbes Infect (2022) 11 pp. 293-305 [ DOI: doi:10.1080/22221751.2021.2022439 Pubmed: 34935599 ]
- 50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l27 (8 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l23 (10 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l4 (23 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l19 (13 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- Water (18 Da, Ligand)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 5s ribosomal rna (37 kDa, RNA from Mycobacterium tuberculosis H37Ra)
- Mycobacterium tuberculosis ribosome 50s subunit (Complex)
- Clarithromycin (747 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal subunit (Complex from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l17 (19 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l22 (20 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 23s rrna (1 MDa, RNA from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l28 (6 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l33 (6 kDa, Protein from Mycobacterium tuberculosis H37Ra)
- 50s ribosomal protein l9 (16 kDa, Protein from Mycobacterium tuberculosis H37Ra)
RBD-1 of SARS-CoV-2 Beta spike in complex with S5D2 Fab
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wcr
Q-score: 0.354
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Light chain of s5d2 fab (Complex)
- Sars-cov-2 spike protein (Complex from Mus musculus)
- Rbd-1 of sars-cov-2 beta spike in complex with s5d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s5d2 fab (Complex from Mus musculus)
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
SARS-CoV-2 Beta spike in complex with one S5D2 Fab
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wcz
Q-score: 0.256
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Light chain of s5d2 fab (Complex)
- Sars-cov-2 spike protein (Complex from Mus musculus)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
- Sars-cov-2 beta spike in complex with one s5d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s5d2 fab (Complex from Mus musculus)
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
SARS-CoV-2 Beta spike in complex with two S5D2 Fabs
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7wd0
Q-score: 0.291
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Light chain of s5d2 fab (Complex)
- Sars-cov-2 spike protein (Complex from Mus musculus)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 beta spike in complex with two s5d2 fabs (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s5d2 fab (Complex from Mus musculus)
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
SARS-CoV-2 Beta spike in complex with three S5D2 Fabs
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wd7
Q-score: 0.22
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Sars-cov-2 spike protein (Complex from Mus musculus)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 beta spike in complex with two s5d2 fabs (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of s5d2 fab (Complex from Mus musculus)
- Heavy chain of s5d2 fab (Complex)
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
SARS-CoV-2 Beta spike SD1 in complex with S3H3 Fab
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7wd8
Q-score: 0.28
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Light chain of s3h3 fab (Complex from Mus musculus)
- Sars-cov-2 spike protein (Complex from Mus musculus)
- Light chain of s3h3 fab (23 kDa, Protein from Mus musculus)
- Heavy chain of s3h3 fab (23 kDa, Protein from Mus musculus)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s3h3 fab (Complex)
- Sars-cov-2 beta spike in complex with s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Partial spike of sars-cov-2 beta variant (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Beta spike in complex with three S3H3 Fabs
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7wd9
Q-score: 0.204
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Light chain of s3h3 fab (23 kDa, Protein from Mus musculus)
- Light chain of s3h3 fab (Complex)
- Heavy chain of s3h3 fab (23 kDa, Protein from Mus musculus)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 beta spike in complex with s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Beta spike in complex with two S3H3 Fabs
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7wdf
Q-score: 0.188
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Light chain of s3h3 fab (23 kDa, Protein from Mus musculus)
- Light chain of s3h3 fab (Complex)
- Heavy chain of s3h3 fab (23 kDa, Protein from Mus musculus)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 beta spike in complex with s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)