Cryo-EM structure of BAP1-ASXL1 bound to chromatosome
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8h1t
Q-score: 0.435
Ge W, Yu C, Li J, Yu Z, Li X, Zhang Y, Liu CP, Li Y, Tian C, Zhang X, Li G, Zhu B, Xu RM
Nature (2023) 616 pp. 176-182 [ Pubmed: 36991118 DOI: doi:10.1038/s41586-023-05841-y ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Ubiquitin (8 kDa, Protein from Homo sapiens)
- Histone h2b type 2-e (13 kDa, Protein from Homo sapiens)
- Dna (187-mer) (57 kDa, DNA from Homo sapiens)
- Histone h2a type 1-d (14 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (187-mer) (58 kDa, DNA from Homo sapiens)
- Polycomb group protein asxl1 (41 kDa, Protein from Homo sapiens)
- Cryo-em structure of bap1-asxl1 bound to chromatosome (Complex from Homo sapiens)
- Ubiquitin carboxyl-terminal hydrolase bap1 (80 kDa, Protein from Homo sapiens)
- Histone h1.4 (23 kDa, Protein from Homo sapiens)
Cryo-EM structure of the 1:1 Orc1 BAH domain in complex with nucleosome
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7e9c
Q-score: 0.311
Jiang H, Yu C, Liu CP, Han X, Yu Z, Xu RM
To Be Published
- Origin recognition complex subunit 1 (Complex)
- Yeast orc1 bah domain in complex with 147-bp nucleosome (Complex from Saccharomyces cerevisiae)
- Histone h3 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2b.2 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (Complex from Escherichia coli)
- Histone h2a.2 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone (Complex from Saccharomyces cerevisiae)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Origin recognition complex subunit 1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h4 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Cryo-EM structure of the 2:1 Orc1 BAH domain in complex with nucleosome
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7e9f
Q-score: 0.319
Jiang H, Yu C, Liu CP, Han X, Yu Z, Xu RM
To Be Published
- Dna (Complex from Saccharomyces cerevisiae S288C)
- Origin recognition complex subunit 1 (Complex)
- Histone (Complex from Escherichia coli)
- Histone h3 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2b.2 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Origin recognition complex subunit 1 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2a.2 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Yeast orc1 bah domain in complex with 147-bp nucleosome (Complex from Saccharomyces cerevisiae S288C)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Dna (147-mer) (45 kDa, DNA from Escherichia coli)
- Histone h4 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
pri-miRNA bound DROSHA-DGCR8 complex
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6lxd
Q-score: 0.344
Jin W, Wang J, Liu CP, Wang HW, Xu RM
Mol Cell (2020) 78 pp. 423- [ DOI: doi:10.1016/j.molcel.2020.02.024 Pubmed: 32220645 ]
- Zinc ion (65 Da, Ligand)
- Rna (102-mer) (32 kDa, RNA from Homo sapiens)
- Ribonuclease 3 (115 kDa, Protein from Homo sapiens)
- Ternary complex of drosha-dgcr8 with pri-16-1m rna (Complex from Homo sapiens)
- Microprocessor complex subunit dgcr8 (86 kDa, Protein from Homo sapiens)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6lxe
Q-score: 0.263
Jin W, Wang J, Liu CP, Wang HW, Xu RM
Mol Cell (2020) 78 pp. 423- [ DOI: doi:10.1016/j.molcel.2020.02.024 Pubmed: 32220645 ]
- Zinc ion (65 Da, Ligand)
- Microprocessor complex subunit dgcr8 (86 kDa, Protein from Homo sapiens)
- Ribonuclease 3 (115 kDa, Protein from Homo sapiens)
- Ternary complex of drosha-dgcr8 (Complex from Homo sapiens)