Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 6jlu
Q-score: 0.385
Pi X, Zhao S, Wang W, Liu D, Xu C, Han G, Kuang T, Sui SF, Shen JR
Science (2019) 365 [ DOI: doi:10.1126/science.aax4406 Pubmed: 31371578 ]
- Psbz (6 kDa, Protein from Chaetoceros gracilis)
- Chlorophyll c2 (608 Da, Ligand)
- Psbk (4 kDa, Protein from Chaetoceros gracilis)
- Psb31 (18 kDa, Protein from Chaetoceros gracilis)
- Psbj (3 kDa, Protein from Chaetoceros gracilis)
- Psba (39 kDa, Protein from Chaetoceros gracilis)
- Fcp-a (18 kDa, Protein from Chaetoceros gracilis)
- Beta-carotene (536 Da, Ligand)
- Psbl (4 kDa, Protein from Chaetoceros gracilis)
- Psbt (3 kDa, Protein from Chaetoceros gracilis)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Psbe (9 kDa, Protein from Chaetoceros gracilis)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Psb34 (2 kDa, Protein from Chaetoceros gracilis)
- Psbf (3 kDa, Protein from Chaetoceros gracilis)
- Extrinsic protein in photosystem ii (22 kDa, Protein from Chaetoceros gracilis)
- Cytochrome c-550 (14 kDa, Protein from Chaetoceros gracilis)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Psbm (4 kDa, Protein from Chaetoceros gracilis)
- Bicarbonate ion (61 Da, Ligand)
- Extrinsic protein in photosystem ii (26 kDa, Protein from Chaetoceros gracilis)
- Pheophytin a (871 Da, Ligand)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate (658 Da, Ligand)
- Psbc (49 kDa, Protein from Chaetoceros gracilis)
- Photosystem ii reaction center protein h (7 kDa, Protein from Chaetoceros gracilis)
- Fe (ii) ion (55 Da, Ligand)
- Fcp-d (24 kDa, Protein from Chaetoceros gracilis)
- Fcp-e (18 kDa, Protein from Chaetoceros gracilis)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psby (3 kDa, Protein from Chaetoceros gracilis)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Psbi (3 kDa, Protein from Chaetoceros gracilis)
- Psii-fcp supercomplex (Complex from Chaetoceros gracilis)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Water (18 Da, Ligand)
- Psbw (5 kDa, Protein from Chaetoceros gracilis)
- Psbd (37 kDa, Protein from Chaetoceros gracilis)
- Photosystem ii reaction center x protein (3 kDa, Protein from Chaetoceros gracilis)
- Extrinsic protein in photosystem ii (10 kDa, Protein from Chaetoceros gracilis)
- Psbb (56 kDa, Protein from Chaetoceros gracilis)
- Chloride ion (35 Da, Ligand)
- Chlorophyll c1 (610 Da, Ligand)
- Fcp-f (18 kDa, Protein from Chaetoceros gracilis)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Psbg (6 kDa, Protein from Chaetoceros gracilis)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
The structure of Enterovirus D68 mature virion
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6aj0
Q-score: 0.547
Zheng Q, Zhu R, Xu L, He M, Yan X, Liu D, Yin Z, Wu Y, Li Y, Yang L, Hou W, Li S, Li Z, Chen Z, Li Z, Yu H, Gu Y, Zhang J, Baker TS, Zhou ZH, Graham BS, Cheng T, Li S, Xia N
Nat Microbiol (2019) 4 pp. 124-133 [ DOI: doi:10.1038/s41564-018-0275-7 Pubmed: 30397341 ]
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
- Capsid protein vp3 (27 kDa, Protein from Enterovirus D68)
- Capsid protein vp4 (7 kDa, Protein from Enterovirus D68)
- Virion protein 2 (27 kDa, Protein from Enterovirus D68)
- Viral protein 1 (32 kDa, Protein from Enterovirus D68)
The structure of ICAM-5 triggered Enterovirus D68 virus A-particle
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6aj2
Q-score: 0.412
Zheng Q, Zhu R, Xu L, He M, Yan X, Liu D, Yin Z, Wu Y, Li Y, Yang L, Hou W, Li S, Li Z, Chen Z, Li Z, Yu H, Gu Y, Zhang J, Baker TS, Zhou ZH, Graham BS, Cheng T, Li S, Xia N
Nat Microbiol (2019) 4 pp. 124-133 [ DOI: doi:10.1038/s41564-018-0275-7 Pubmed: 30397341 ]
- Enterovirus d (Virus from Enterovirus D)
- Capsid protein vp1 (32 kDa, Protein from Enterovirus D68)
- Capsid protein vp2 (27 kDa, Protein from Enterovirus D68)
- Capsid protein vp3 (27 kDa, Protein from Enterovirus D68)
The structure of Enterovirus D68 procapsid
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6aj3
Q-score: 0.472
Zheng Q, Zhu R, Xu L, He M, Yan X, Liu D, Yin Z, Wu Y, Li Y, Yang L, Hou W, Li S, Li Z, Chen Z, Li Z, Yu H, Gu Y, Zhang J, Baker TS, Zhou ZH, Graham BS, Cheng T, Li S, Xia N
Nat Microbiol (2019) 4 pp. 124-133 [ DOI: doi:10.1038/s41564-018-0275-7 Pubmed: 30397341 ]
- Capsid protein vp1 (32 kDa, Protein from Enterovirus D68)
- Capsid protein vp2 (27 kDa, Protein from Enterovirus D68)
- Enterovirus d (Virus from Enterovirus d)
- Capsid protein vp3 (27 kDa, Protein from Enterovirus D68)
The structure of Enterovirus D68 mature virion in complex with Fab 15C5
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6aj7
Q-score: 0.518
Zheng Q, Zhu R, Xu L, He M, Yan X, Liu D, Yin Z, Wu Y, Li Y, Yang L, Hou W, Li S, Li Z, Chen Z, Li Z, Yu H, Gu Y, Zhang J, Baker TS, Zhou ZH, Graham BS, Cheng T, Li S, Xia N
Nat Microbiol (2019) 4 pp. 124-133 [ DOI: doi:10.1038/s41564-018-0275-7 Pubmed: 30397341 ]
- Vl of fab 15c5 (11 kDa, Protein from Mus musculus)
- Capsid protein vp1 (32 kDa, Protein from Enterovirus D68)
- Capsid protein vp2 (27 kDa, Protein from Enterovirus D68)
- Capsid protein vp3 (27 kDa, Protein from Enterovirus D68)
- Enterovirus d68 (Virus from Enterovirus D68)
- Vh of fab 15c5 (13 kDa, Protein from Mus musculus)
The structure of Enterovirus D68 mature virion in complex with Fab 15C5 and 11G1
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6aj9
Q-score: 0.497
Zheng Q, Zhu R, Xu L, He M, Yan X, Liu D, Yin Z, Wu Y, Li Y, Yang L, Hou W, Li S, Li Z, Chen Z, Li Z, Yu H, Gu Y, Zhang J, Baker TS, Zhou ZH, Graham BS, Cheng T, Li S, Xia N
Nat Microbiol (2019) 4 pp. 124-133 [ DOI: doi:10.1038/s41564-018-0275-7 Pubmed: 30397341 ]
- Vl of fab 15c5 (11 kDa, Protein from Mus musculus)
- Vh of fab 11g1 (13 kDa, Protein from Mus musculus)
- Capsid protein vp1 (32 kDa, Protein from Enterovirus D68)
- Capsid protein vp2 (27 kDa, Protein from Enterovirus D68)
- Vl of fab 11g1 (12 kDa, Protein from Mus musculus)
- Capsid protein vp3 (27 kDa, Protein from Enterovirus D68)
- Enterovirus d68 (Virus from Enterovirus D68)
- Vh of fab 15c5 (13 kDa, Protein from Mus musculus)
Cryo-EM structure of 8nm repeat tubulin lattice of the ciliary microtubule doublet
Resolution: 5.7 Å
EM Method: Single-particle
Fitted PDBs: 5ubq
Q-score: 0.144
Ichikawa M, Liu D, Kastritis PL, Basu K, Hsu TC, Yang S, Bui KH
Nat Commun (2017) 8 pp. 15035-15035 [ Pubmed: 28462916 DOI: doi:10.1038/ncomms15035 ]
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Tubulin alpha chain (48 kDa, Protein from Tetrahymena thermophila)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin beta chain (48 kDa, Protein from Tetrahymena thermophila)
- 8nm-repeat tubulin lattice of microtubule doublet (Cellular component from Tetrahymena thermophila)