Cryo-EM structure of the dimeric atSPT-ORM1 complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7yjk
Q-score: 0.556
Liu P, Xie T, Wu X, Han G, Gupta SD, Zhang Z, Yue J, Dong F, Gable K, Niranjanakumari S, Li W, Wang L, Liu W, Yao R, Cahoon EB, Dunn TM, Gong X
Sci Adv (2023) 9 pp. eadg0728-eadg0728 [ Pubmed: 36989369 DOI: doi:10.1126/sciadv.adg0728 ]
- Spt-orm1 complex (Complex from Arabidopsis thaliana)
- Pyridoxal-5'-phosphate (247 Da, Ligand)
- Transmembrane protein, putative (duf3317) (9 kDa, Protein from Arabidopsis thaliana)
- N-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]tetracosanamide (650 Da, Ligand)
- Long chain base biosynthesis protein 1 (53 kDa, Protein from Arabidopsis thaliana)
- Ormdl family protein (18 kDa, Protein from Arabidopsis thaliana)
- Long chain base biosynthesis protein 2a (54 kDa, Protein from Arabidopsis thaliana)
Cryo-EM structure of the monomeric atSPT-ORM1 complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7yjm
Q-score: 0.585
Liu P, Xie T, Wu X, Han G, Gupta SD, Zhang Z, Yue J, Dong F, Gable K, Niranjanakumari S, Li W, Wang L, Liu W, Yao R, Cahoon EB, Dunn TM, Gong X
Sci Adv (2023) 9 pp. eadg0728-eadg0728 [ Pubmed: 36989369 DOI: doi:10.1126/sciadv.adg0728 ]
- Spt-orm1 complex (Complex from Arabidopsis thaliana)
- Pyridoxal-5'-phosphate (247 Da, Ligand)
- Transmembrane protein, putative (duf3317) (9 kDa, Protein from Arabidopsis thaliana)
- N-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]tetracosanamide (650 Da, Ligand)
- Atlcb1 (46 kDa, Protein from Arabidopsis thaliana)
- Ormdl family protein (18 kDa, Protein from Arabidopsis thaliana)
- Atlcb1 (6 kDa, Protein from Arabidopsis thaliana)
- Long chain base biosynthesis protein 2a (54 kDa, Protein from Arabidopsis thaliana)
Cryo-EM structure of the monomeric atSPT-ORM1 (ORM1-N17A) complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7yjn
Q-score: 0.526
Liu P, Xie T, Wu X, Han G, Gupta SD, Zhang Z, Yue J, Dong F, Gable K, Niranjanakumari S, Li W, Wang L, Liu W, Yao R, Cahoon EB, Dunn TM, Gong X
Sci Adv (2023) 9 pp. eadg0728-eadg0728 [ Pubmed: 36989369 DOI: doi:10.1126/sciadv.adg0728 ]
- Spt-orm1 complex (Complex from Arabidopsis thaliana)
- Pyridoxal-5'-phosphate (247 Da, Ligand)
- Transmembrane protein, putative (duf3317) (9 kDa, Protein from Arabidopsis thaliana)
- Ormdl family protein (18 kDa, Protein from Arabidopsis thaliana)
- Long chain base biosynthesis protein 1 (6 kDa, Protein from Arabidopsis thaliana)
- Long chain base biosynthesis protein 1 (46 kDa, Protein from Arabidopsis thaliana)
- Long chain base biosynthesis protein 2a (54 kDa, Protein from Arabidopsis thaliana)
Cryo-EM structure of the monomeric atSPT-ORM1 (LCB2a-deltaN5) complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7yjo
Q-score: 0.621
Liu P, Xie T, Wu X, Han G, Gupta SD, Zhang Z, Yue J, Dong F, Gable K, Niranjanakumari S, Li W, Wang L, Liu W, Yao R, Cahoon EB, Dunn TM, Gong X
Sci Adv (2023) 9 pp. eadg0728-eadg0728 [ Pubmed: 36989369 DOI: doi:10.1126/sciadv.adg0728 ]
- Spt-orm1 complex (Complex from Arabidopsis thaliana)
- Transmembrane protein, putative (duf3317) (9 kDa, Protein from Arabidopsis thaliana)
- N-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]tetracosanamide (650 Da, Ligand)
- Atlcb1 (46 kDa, Protein from Arabidopsis thaliana)
- Long chain base biosynthesis protein 2a (53 kDa, Protein from Arabidopsis thaliana)
- [3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-ylmethyl]-serine (336 Da, Ligand)
- Ormdl family protein (18 kDa, Protein from Arabidopsis thaliana)
- Atlcb1 (6 kDa, Protein from Arabidopsis thaliana)
Cryo-EM structure of hDisp1NNN-3C
Resolution: 3.61 Å
EM Method: Single-particle
Fitted PDBs: 7e2g
Q-score: 0.471
Li W, Wang L, Wierbowski BM, Lu M, Dong F, Liu W, Li S, Wang P, Salic A, Gong X
Nat Commun (2021) 12 pp. 6966-6966 [ Pubmed: 34845226 DOI: doi:10.1038/s41467-021-27257-w ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hdisp1nnn-3c (150 kDa, Complex from Homo sapiens)
- Protein dispatched homolog 1,protein dispatched homolog 1 (169 kDa, Protein from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
Cryo-EM structure of hDisp1NNN-3C-Cleavage
Resolution: 3.68 Å
EM Method: Single-particle
Fitted PDBs: 7e2h
Q-score: 0.464
Li W, Wang L, Wierbowski BM, Lu M, Dong F, Liu W, Li S, Wang P, Salic A, Gong X
Nat Commun (2021) 12 pp. 6966-6966 [ Pubmed: 34845226 DOI: doi:10.1038/s41467-021-27257-w ]
- Hdisp1nnn-3c (150 kDa, Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Protein dispatched homolog 1 (140 kDa, Protein from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Protein dispatched homolog 1 (29 kDa, Protein from Homo sapiens)
Cryo-EM structure of hDisp1NNN-ShhN
Resolution: 4.07 Å
EM Method: Single-particle
Fitted PDBs: 7e2i
Q-score: 0.375
Li W, Wang L, Wierbowski BM, Lu M, Dong F, Liu W, Li S, Wang P, Salic A, Gong X
Nat Commun (2021) 12 pp. 6966-6966 [ Pubmed: 34845226 DOI: doi:10.1038/s41467-021-27257-w ]
- Hdisp1nnn-shhn (150 kDa, Complex)
- Hdisp1nnn (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Sonic hedgehog protein (49 kDa, Protein from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
- Protein dispatched homolog 1 (171 kDa, Protein from Homo sapiens)
- Shhn (Complex from Homo sapiens)