Cryo-EM structure of the yeast SPT-ORM2 (ORM2-S3A) complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8iaj
Q-score: 0.567
Xie T, Dong F, Han G, Wu X, Liu P, Zhang Z, Zhong J, Niranjanakumari S, Gable K, Gupta SD, Liu W, Harrison PJ, Campopiano DJ, Dunn TM, Gong X
Cell Rep (2024) 43 pp. 113717-113717 [ Pubmed: 38285738 DOI: doi:10.1016/j.celrep.2024.113717 ]
- Serine palmitoyltransferase-regulating protein tsc3 (9 kDa, Protein from Saccharomyces cerevisiae)
- Pyridoxal-5'-phosphate (247 Da, Ligand)
- Protein orm2 (24 kDa, Protein from Saccharomyces cerevisiae S288C)
- N-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]tetracosanamide (650 Da, Ligand)
- Spt-orm2 complex (Complex from Saccharomyces cerevisiae)
- Serine palmitoyltransferase 2 (63 kDa, Protein from Saccharomyces cerevisiae)
- Chimera of long chain base biosynthesis protein 1 and serine palmitoyltransferase 1 (59 kDa, Protein from Saccharomyces cerevisiae S288C )
Cryo-EM structure of the yeast SPT-ORM2 (ORM2-S3A-N71A) complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8iak
Q-score: 0.548
Xie T, Dong F, Han G, Wu X, Liu P, Zhang Z, Zhong J, Niranjanakumari S, Gable K, Gupta SD, Liu W, Harrison PJ, Campopiano DJ, Dunn TM, Gong X
Cell Rep (2024) 43 pp. 113717-113717 [ Pubmed: 38285738 DOI: doi:10.1016/j.celrep.2024.113717 ]
- Protein orm2 (24 kDa, Protein from Saccharomyces cerevisiae)
- Serine palmitoyltransferase-regulating protein tsc3 (9 kDa, Protein from Saccharomyces cerevisiae)
- Pyridoxal-5'-phosphate (247 Da, Ligand)
- Chimera of long chain base biosynthesis protein 1 and serine palmitoyltransferase 1 (59 kDa, Protein from Saccharomyces cerevisiae S288C)
- Spt-orm2 complex (Complex from Saccharomyces cerevisiae)
- Serine palmitoyltransferase 2 (63 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of the yeast SPT-ORM2 (ORM2-S3D) complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8iam
Q-score: 0.556
Xie T, Dong F, Han G, Wu X, Liu P, Zhang Z, Zhong J, Niranjanakumari S, Gable K, Gupta SD, Liu W, Harrison PJ, Campopiano DJ, Dunn TM, Gong X
Cell Rep (2024) 43 pp. 113717-113717 [ Pubmed: 38285738 DOI: doi:10.1016/j.celrep.2024.113717 ]
- Chimera of long chain base biosynthesis protein 1 and serine palmitoyltransferase 1 (59 kDa, Protein from Saccharomyces cerevisiae)
- Serine palmitoyltransferase-regulating protein tsc3 (9 kDa, Protein from Saccharomyces cerevisiae)
- Pyridoxal-5'-phosphate (247 Da, Ligand)
- N-[(2s,3r,4e)-1,3-dihydroxyoctadec-4-en-2-yl]tetracosanamide (650 Da, Ligand)
- Serine palmitoyltransferase 2 (63 kDa, Protein from Saccharomyces cerevisiae)
- Spt-orm2 complex (Complex from Saccharomyces cerevisiae)
- Protein orm2 (24 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of the polyphosphate polymerase VTC complex(Vtc4/Vtc3/Vtc1)
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8i6v
Q-score: 0.494
Liu W, Wang J, Comte-Miserez V, Zhang M, Yu X, Chen Q, Jessen HJ, Mayer A, Wu S, Ye S
EMBO J (2023) 42 pp. e113320-e113320 [ Pubmed: 37066886 DOI: doi:10.15252/embj.2022113320 ]
- Vacuolar transporter chaperone complex subunit 4 (83 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Phosphate ion (94 Da, Ligand)
- Vacuolar transporter chaperone complex subunit 1 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Vacuolar transporter chaperone 3 complex subunit 3 (96 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Triphosphate (257 Da, Ligand)
- Cryo-em structure of the polyphosphate polymerase vtc complex(vtc4/vtc3/vtc1) (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Manganese (ii) ion (54 Da, Ligand)
- Water (18 Da, Ligand)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)