Resolution: 7.39 Å
EM Method: Single-particle
Fitted PDBs: 8w7s
Q-score: 0.212
Xu Z, Feng J, Yu D, Huo Y, Ma X, Lam WH, Liu Z, Li XD, Ishibashi T, Dang S, Zhai Y
Nat Commun (2023) 14 pp. 5849-5849 [ DOI: doi:10.1038/s41467-023-41506-0 Pubmed: 37730685 ]
- Cell division control protein 45 (74 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae S288C)
- Replisome complex in state iv (1 MDa, Complex from Saccharomyces cerevisiae)
- Dna replication complex gins protein psf2 (25 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna polymerase alpha-binding protein (104 kDa, Protein from Saccharomyces cerevisiae S288C)
- Minichromosome maintenance protein 5 (86 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication complex gins protein psf3 (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm3 (107 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication complex gins protein psf1 (24 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (71-mer) (22 kDa, DNA from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae)
- Dna polymerase epsilon subunit b (78 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication complex gins protein sld5 (33 kDa, Protein from Saccharomyces cerevisiae S288C)
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8kg6
Q-score: 0.437
Xu Z, Feng J, Yu D, Huo Y, Ma X, Lam WH, Liu Z, Li XD, Ishibashi T, Dang S, Zhai Y
Nat Commun (2023) 14 pp. 5849-5849 [ DOI: doi:10.1038/s41467-023-41506-0 Pubmed: 37730685 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Dna polymerase alpha-binding protein (104 kDa, Protein from Saccharomyces cerevisiae S288C)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chromosome segregation in meiosis protein 3 (36 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (61-mer) (18 kDa, DNA from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae S288C)
- Cell division control protein 45 (74 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication complex gins protein psf2 (25 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (71-mer) (22 kDa, DNA from Saccharomyces cerevisiae)
- Topoisomerase 1-associated factor 1 (141 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna polymerase epsilon subunit b (78 kDa, Protein from Saccharomyces cerevisiae S288C)
- Replisome complex in state i (1 MDa, Complex from Saccharomyces cerevisiae)
- Dna replication complex gins protein sld5 (33 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae S288C)
- Minichromosome maintenance protein 5 (86 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication complex gins protein psf3 (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm3 (107 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
- Dna replication complex gins protein psf1 (24 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna polymerase epsilon catalytic subunit a (255 kDa, Protein from Saccharomyces cerevisiae S288C)
Resolution: 4.23 Å
EM Method: Single-particle
Fitted PDBs: 8kg8
Q-score: 0.246
Xu Z, Feng J, Yu D, Huo Y, Ma X, Lam WH, Liu Z, Li XD, Ishibashi T, Dang S, Zhai Y
Nat Commun (2023) 14 pp. 5849-5849 [ DOI: doi:10.1038/s41467-023-41506-0 Pubmed: 37730685 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Dna polymerase alpha-binding protein (104 kDa, Protein from Saccharomyces cerevisiae S288C)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dna (61-mer) (18 kDa, DNA from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae S288C)
- Cell division control protein 45 (74 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication complex gins protein psf2 (25 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (71-mer) (22 kDa, DNA from Saccharomyces cerevisiae)
- Dna polymerase epsilon subunit b (78 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication complex gins protein sld5 (33 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae S288C)
- Minichromosome maintenance protein 5 (86 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication complex gins protein psf3 (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm3 (107 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
- Dna replication complex gins protein psf1 (24 kDa, Protein from Saccharomyces cerevisiae S288C)
- Replisome complex in state ii (1 MDa, Complex from Saccharomyces cerevisiae)
- Dna polymerase epsilon catalytic subunit a (255 kDa, Protein from Saccharomyces cerevisiae S288C)
Resolution: 4.52 Å
EM Method: Single-particle
Fitted PDBs: 8kg9
Q-score: 0.19
Xu Z, Feng J, Yu D, Huo Y, Ma X, Lam WH, Liu Z, Li XD, Ishibashi T, Dang S, Zhai Y
Nat Commun (2023) 14 pp. 5849-5849 [ DOI: doi:10.1038/s41467-023-41506-0 Pubmed: 37730685 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Dna polymerase alpha-binding protein (104 kDa, Protein from Saccharomyces cerevisiae S288C)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dna (61-mer) (18 kDa, DNA from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae)
- Cell division control protein 45 (74 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication complex gins protein psf2 (25 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae)
- Dna polymerase epsilon subunit b (78 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication complex gins protein sld5 (33 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (70-mer) (22 kDa, DNA from Saccharomyces cerevisiae)
- Minichromosome maintenance protein 5 (86 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication complex gins protein psf3 (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm3 (107 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
- Dna replication complex gins protein psf1 (24 kDa, Protein from Saccharomyces cerevisiae S288C)
- Replisome complex in state ii (1 MDa, Complex from Saccharomyces cerevisiae)
- Dna polymerase epsilon catalytic subunit a (255 kDa, Protein from Saccharomyces cerevisiae S288C)
Resolution: 4.12 Å
EM Method: Single-particle
Fitted PDBs: 8w7m
Q-score: 0.267
Xu Z, Feng J, Yu D, Huo Y, Ma X, Lam WH, Liu Z, Li XD, Ishibashi T, Dang S, Zhai Y
Nat Commun (2023) 14 pp. 5849-5849 [ DOI: doi:10.1038/s41467-023-41506-0 Pubmed: 37730685 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Dna polymerase alpha-binding protein (104 kDa, Protein from Saccharomyces cerevisiae S288C)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae)
- Cell division control protein 45 (74 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication complex gins protein psf2 (25 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna (71-mer) (22 kDa, DNA from Saccharomyces cerevisiae)
- Replisome complex in state v (1 MDa, Complex from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae)
- Dna polymerase epsilon subunit b (78 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication complex gins protein sld5 (33 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae S288C)
- Minichromosome maintenance protein 5 (86 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication complex gins protein psf3 (21 kDa, Protein from Saccharomyces cerevisiae S288C)
- Dna replication licensing factor mcm3 (107 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
- Dna replication complex gins protein psf1 (24 kDa, Protein from Saccharomyces cerevisiae S288C)
Structure of photosystem I supercomplex with light-harvesting complexes I and II
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 5zji
Q-score: 0.494
Pan X, Ma J, Su X, Cao P, Chang W, Liu Z, Zhang X, Li M
Science (2018) 360 pp. 1109-1113 [ Pubmed: 29880686 DOI: doi:10.1126/science.aat1156 ]
- Photosystem i reaction center subunit ix (4 kDa, Protein from Maize)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Maize)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Maize)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit iv a (14 kDa, Protein from Maize)
- Photosystem i reaction center subunit ii (21 kDa, Protein from Maize)
- Iron/sulfur cluster (351 Da, Ligand)
- Supercomplex of plant psi-lhci-lhcii from zea mays (Complex from Zea mays)
- Photosystem i reaction center subunit psak (13 kDa, Protein from Maize)
- Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Maize)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Maize)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit iii (23 kDa, Protein from Maize)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Maize)
- 16kda membrane protein (14 kDa, Protein from Maize)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Chlorophyll a-b binding protein 1, chloroplastic (24 kDa, Protein from Maize)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from maize)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit xi (22 kDa, Protein from Maize)
- Photosystem i reaction center subunit n (15 kDa, Protein from Maize)
- Photosystem i reaction center subunit v (15 kDa, Protein from Maize)
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Maize)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i subunit vii (8 kDa, Protein from maize)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Maize)
- Chlorophyll a isomer (893 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Maize)
Structure of stacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 5xnl
Q-score: 0.508
Su X, Ma J, Wei X, Cao P, Zhu D, Chang W, Liu Z, Zhang X, Li M
Science (2017) 357 pp. 815-820 [ Pubmed: 28839073 DOI: doi:10.1126/science.aan0327 ]
- Cytochrome b559 subunit alpha (9 kDa, Protein from Pisum sativum)
- Oxygen-evolving enhancer protein 2, chloroplastic (20 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein w (5 kDa, Protein from Pisum sativum)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll a-b binding protein 8, chloroplastic (24 kDa, Protein from Pisum sativum)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem ii reaction center protein h (7 kDa, Protein from Pisum sativum)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii reaction center protein i, psbi (4 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein t (4 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein m (3 kDa, Protein from Pisum sativum)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Light harvesting chlorophyll a/b-binding protein lhcb5, cp26 (26 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein x (8 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein z (6 kDa, Protein from Pisum sativum)
- Chlorophyll b (907 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Pheophytin a (871 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Photosystem ii reaction center protein j (4 kDa, Protein from Pisum sativum)
- Oxygen-evolving enhancer protein 3 (16 kDa, Protein from Pisum sativum)
- Cytochrome b559 subunit beta, psbf (4 kDa, Protein from Pisum sativum)
- Light harvesting chlorophyll a/b-binding protein lhcb4, cp29 (27 kDa, Protein from Pisum sativum)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein k (6 kDa, Protein from Pisum sativum)
- Oxygen-evolving enhancer protein 1, chloroplastic (26 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein l (4 kDa, Protein from Pisum sativum)
- Photosystem ii protein d1 (38 kDa, Protein from Pisum sativum)
- C2s2m2-type psii-lhcii supercomplex from pisum sativum (Complex from Pisum sativum)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii cp43 reaction center protein (52 kDa, Protein from Pisum sativum)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Pisum sativum)
- Chlorophyll a (893 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Light harvesting chlorophyll a/b-binding protein lhcb6, cp24 (22 kDa, Protein from Pisum sativum)
- Water (18 Da, Ligand)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Pisum sativum)
- Photosystem ii d2 protein (39 kDa, Protein from Pisum sativum)
- Chloride ion (35 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
Structure of unstacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 5xnm
Q-score: 0.438
Su X, Ma J, Wei X, Cao P, Zhu D, Chang W, Liu Z, Zhang X, Li M
Science (2017) 357 pp. 815-820 [ Pubmed: 28839073 DOI: doi:10.1126/science.aan0327 ]
- Cytochrome b559 subunit alpha (9 kDa, Protein from Pisum sativum)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll a-b binding protein 8, chloroplastic (24 kDa, Protein from Pisum sativum)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem ii reaction center protein h (7 kDa, Protein from Pisum sativum)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii reaction center protein i, psbi (4 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein t (4 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein m (3 kDa, Protein from Pisum sativum)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Light harvesting chlorophyll a/b-binding protein lhcb5, cp26 (26 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein x (8 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein z (6 kDa, Protein from Pisum sativum)
- Chlorophyll b (907 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Pheophytin a (871 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Photosystem ii reaction center protein j (4 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein w, psbw (5 kDa, Protein from Pisum sativum)
- Cytochrome b559 subunit beta, psbf (4 kDa, Protein from Pisum sativum)
- Light harvesting chlorophyll a/b-binding protein lhcb4, cp29 (27 kDa, Protein from Pisum sativum)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein k (6 kDa, Protein from Pisum sativum)
- Oxygen-evolving enhancer protein 1, chloroplastic (26 kDa, Protein from Pisum sativum)
- Photosystem ii luminal extrinsic protein tn, psbtn (10 kDa, Protein from Pisum sativum)
- Photosystem ii reaction center protein l (4 kDa, Protein from Pisum sativum)
- Photosystem ii protein d1 (38 kDa, Protein from Pisum sativum)
- C2s2m2-type psii-lhcii supercomplex from pisum sativum (Complex from Pisum sativum)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii cp43 reaction center protein (52 kDa, Protein from Pisum sativum)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Pisum sativum)
- Chlorophyll a (893 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Light harvesting chlorophyll a/b-binding protein lhcb6, cp24 (22 kDa, Protein from Pisum sativum)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Pisum sativum)
- Photosystem ii d2 protein (39 kDa, Protein from Pisum sativum)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5xnn
Q-score: 0.447
Su X, Ma J, Wei X, Cao P, Zhu D, Chang W, Liu Z, Zhang X, Li M
Science (2017) 357 pp. 815-820 [ Pubmed: 28839073 DOI: doi:10.1126/science.aan0327 ]
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Pisum sativum)
- M-lhcii and cp24 complexes in the stacked c2s2m2-type psii-lhcii supercomplex from pisum sativum (Complex from Pisum sativum)
- Light harvesting chlorophyll a/b-binding protein lhcb6, cp24 (22 kDa, Protein from Pisum sativum)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll a-b binding protein 8, chloroplastic (24 kDa, Protein from Pisum sativum)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 5xno
Q-score: 0.41
Su X, Ma J, Wei X, Cao P, Zhu D, Chang W, Liu Z, Zhang X, Li M
Science (2017) 357 pp. 815-820 [ Pubmed: 28839073 DOI: doi:10.1126/science.aan0327 ]
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Pisum sativum)
- Chlorophyll a (893 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Light harvesting chlorophyll a/b-binding protein lhcb6, cp24 (22 kDa, Protein from Pisum sativum)
- Chlorophyll b (907 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll a-b binding protein 8, chloroplastic (24 kDa, Protein from Pisum sativum)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- M-lhcii and cp24 complexes in the unstacked c2s2m2-type psii-lhcii supercomplex from pisum sativum (Complex from Pisum sativum)