Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7yff
Q-score: 0.445
Zhang J, Zhang M, Wang Q, Wen H, Liu Z, Wang F, Wang Y, Yao F, Song N, Kou Z, Li Y, Guo F, Zhu S
Nat Struct Mol Biol (2023) 30 pp. 629-639 [ DOI: doi:10.1038/s41594-023-00959-z Pubmed: 36959261 ]
- (2r)-4-(3-phosphonopropyl)piperazine-2-carboxylic acid (252 Da, Ligand)
- Glutamate receptor ionotropic, nmda 1 (94 kDa, Protein from Homo sapiens)
- Glutamate receptor ionotropic, nmda 2d (97 kDa, Protein from Homo sapiens)
- Glycine (75 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nmda receptor with nmda 1 incorperated with nmda 2d (384 MDa, Complex from Homo sapiens)
Structure of GluN1a-GluN2D NMDA receptor in complex with agonists glycine and glutamate.
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7yfl
Q-score: 0.404
Zhang J, Zhang M, Wang Q, Wen H, Liu Z, Wang F, Wang Y, Yao F, Song N, Kou Z, Li Y, Guo F, Zhu S
Nat Struct Mol Biol (2023) 30 pp. 629-639 [ DOI: doi:10.1038/s41594-023-00959-z Pubmed: 36959261 ]
- Glutamic acid (147 Da, Ligand)
- Glutamate receptor ionotropic, nmda 2d (97 kDa, Protein from Homo sapiens)
- Glycine (75 Da, Ligand)
- Glutamate receptor ionotropic, nmda 1 (95 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nmda receptor with nmda 1 incorperated with nmda 2d (384 MDa, Complex from Homo sapiens)
Structure of GluN1a E698C-GluN2D NMDA receptor in cystines crosslinked state.
Resolution: 6.4 Å
EM Method: Single-particle
Fitted PDBs: 7yfo
Q-score: 0.234
Zhang J, Zhang M, Wang Q, Wen H, Liu Z, Wang F, Wang Y, Yao F, Song N, Kou Z, Li Y, Guo F, Zhu S
Nat Struct Mol Biol (2023) 30 pp. 629-639 [ DOI: doi:10.1038/s41594-023-00959-z Pubmed: 36959261 ]
- Glutamate receptor ionotropic, nmda 1 (95 kDa, Protein from Homo sapiens)
- Glutamate receptor ionotropic, nmda 2d (97 kDa, Protein from Homo sapiens)
- Nmda receptor with nmda 1 incorperated with nmda 2d (384 MDa, Complex from Homo sapiens)
Structure of GluN1a E698C-GluN2D NMDA receptor in cystines non-crosslinked state.
Resolution: 5.1 Å
EM Method: Single-particle
Fitted PDBs: 7yfr
Q-score: 0.388
Zhang J, Zhang M, Wang Q, Wen H, Liu Z, Wang F, Wang Y, Yao F, Song N, Kou Z, Li Y, Guo F, Zhu S
Nat Struct Mol Biol (2023) 30 pp. 629-639 [ DOI: doi:10.1038/s41594-023-00959-z Pubmed: 36959261 ]
- Nmda receptor with nmda 1 incorperated with nmda 2d (384 MDa, Complex from Homo sapiens)
- Glutamic acid (147 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Glycine (75 Da, Ligand)
- Glutamate receptor ionotropic, nmda 1 (95 kDa, Protein from Homo sapiens)
- Glutamate receptor ionotropic, nmda 2d (97 kDa, Protein from Homo sapiens)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7yfg
Q-score: 0.478
Zhang J, Zhang M, Wang Q, Wen H, Liu Z, Wang F, Wang Y, Yao F, Song N, Kou Z, Li Y, Guo F, Zhu S
Nat Struct Mol Biol (2023) 30 pp. 629-639 [ DOI: doi:10.1038/s41594-023-00959-z Pubmed: 36959261 ]
- Glutamate receptor ionotropic, nmda 1 (97 kDa, Protein from Rattus norvegicus)
- Glycine (75 Da, Ligand)
- Glutamate receptor ionotropic, nmda 2c (87 kDa, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rat glun1-glun2c nmda receptor in complex with glycine and glutamate (Cellular component from Rattus norvegicus)
- Glutamic acid (147 Da, Ligand)
Structure of the Rat GluN1-GluN2C NMDA receptor in complex with glycine, glutamate and (R)-PYD-106
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7yfh
Q-score: 0.535
Zhang J, Zhang M, Wang Q, Wen H, Liu Z, Wang F, Wang Y, Yao F, Song N, Kou Z, Li Y, Guo F, Zhu S
Nat Struct Mol Biol (2023) 30 pp. 629-639 [ DOI: doi:10.1038/s41594-023-00959-z Pubmed: 36959261 ]
- Rat glun1-glun2c nmda receptor in complex with glycine, glutamate and (r)-pyd-106 (Cellular component from Rattus norvegicus)
- Methyl 4-[(2~{r})-3-ethanoyl-1-[2-(2-methyl-1~{h}-indol-3-yl)ethyl]-4-oxidanyl-5-oxidanylidene-2~{h}-pyrrol-2-yl]benzoate (432 Da, Ligand)
- Glutamate receptor ionotropic, nmda 1 (97 kDa, Protein from Rattus norvegicus)
- Glycine (75 Da, Ligand)
- Glutamate receptor ionotropic, nmda 2c (87 kDa, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Glutamic acid (147 Da, Ligand)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7yfi
Q-score: 0.401
Zhang J, Zhang M, Wang Q, Wen H, Liu Z, Wang F, Wang Y, Yao F, Song N, Kou Z, Li Y, Guo F, Zhu S
Nat Struct Mol Biol (2023) 30 pp. 629-639 [ DOI: doi:10.1038/s41594-023-00959-z Pubmed: 36959261 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Glutamate receptor ionotropic, nmda 1 (89 kDa, Protein from Rattus norvegicus)
- Glutamate receptor (93 kDa, Protein from Rattus norvegicus)
- Glutamate receptor ionotropic, nmda 2c (91 kDa, Protein from Rattus norvegicus)
- Glycine (75 Da, Ligand)
- Rat tri-heteromeric glun1-glun2a-glun2c nmda receptor in complex with glycine and glutamate (Cellular component from Rattus norvegicus)
- Glutamic acid (147 Da, Ligand)
Structure of GluN1b-GluN2D NMDA receptor in complex with agonists glycine and glutamate.
Resolution: 5.1 Å
EM Method: Single-particle
Fitted PDBs: 7yfm
Q-score: 0.309
Zhang J, Zhang M, Wang Q, Wen H, Liu Z, Wang F, Wang Y, Yao F, Song N, Kou Z, Li Y, Guo F, Zhu S
Nat Struct Mol Biol (2023) 30 pp. 629-639 [ DOI: doi:10.1038/s41594-023-00959-z Pubmed: 36959261 ]
- Glutamate receptor ionotropic, nmda 2d (97 kDa, Protein from Homo sapiens)
- Isoform 6 of glutamate receptor ionotropic, nmda 1 (97 kDa, Protein from Homo sapiens)
- Nmda receptor with nmda 1 incorperated with nmda 2d (384 MDa, Complex from Homo sapiens)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 8hdk
Q-score: 0.264
Zhang J, Zhang M, Wang Q, Wen H, Liu Z, Wang F, Wang Y, Yao F, Song N, Kou Z, Li Y, Guo F, Zhu S
Nat Struct Mol Biol (2023) 30 pp. 629-639 [ DOI: doi:10.1038/s41594-023-00959-z Pubmed: 36959261 ]
- Glutamate receptor ionotropic, nmda 2c (87 kDa, Protein from Rattus norvegicus)
- Rat glun1-glun2c nmda receptor in complex with glycine and glutamate (Cellular component from Rattus norvegicus)
- Glutamate receptor ionotropic, nmda 1 (89 kDa, Protein from Rattus norvegicus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)