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author:"Liu Z" AND current_status:"REL"
Structure of KSHV glycoprotein B
Release date: Feb. 19, 2025
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 8y48
Q-score: 0.452
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 8y48
Q-score: 0.452
Fang XY, Sun C, Liu Z, Zeng MS
To Be Published
Sample:
- Envelope glycoprotein b (73 kDa, Protein from Human herpesvirus 8 strain GK18)
- Glycoprotein b (Complex from Human gammaherpesvirus 8)
Cryo-EM structure of the Cas9d-sgRNA-target DNA complex
Release date: Feb. 19, 2025
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8zdr
Q-score: 0.541
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8zdr
Q-score: 0.541
To Be Published
Sample:
- Dna (32-mer) (11 kDa, DNA from metagenome)
- Rna (144-mer) (51 kDa, RNA from metagenome)
- A protein (Complex from metagenome)
- Zinc ion (65 Da, Ligand)
- Dna (5'-d(p*cp*gp*gp*gp*tp*cp*ap*ap*ap*tp*g)-3') (11 kDa, DNA from metagenome)
- A protein (86 kDa, Protein from metagenome)
Release date: Feb. 5, 2025
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 8z3w
Q-score: 0.297
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 8z3w
Q-score: 0.297
To Be Published
Sample:
- Human ace2 (Complex from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- D614g spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- D614g spike protein (s) in complex with one ace2 (Complex)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
Release date: Feb. 5, 2025
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8z4x
Q-score: 0.271
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8z4x
Q-score: 0.271
To Be Published
Sample:
- Human ace2 (Complex from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- D614g spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- D614g spike protein (s) in complex with two ace2s (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
Release date: Feb. 5, 2025
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 8z64
Q-score: 0.415
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 8z64
Q-score: 0.415
To Be Published
Sample:
- Human ace2 (Complex from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- D614g spike protein (s) in complex with three ace2s (focused on ntd-sd1-rbd-ace2) (Complex)
- D614g spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
Release date: Feb. 5, 2025
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8z6a
Q-score: 0.258
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8z6a
Q-score: 0.258
To Be Published
Sample:
- Human ace2 (Complex from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- D614g spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- D614g spike protein (s) in complex with three ace2s (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
Release date: Feb. 5, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8z7b
Q-score: 0.577
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8z7b
Q-score: 0.577
To Be Published
Sample:
- Sars-cov-2 s trimer in the early fusion intermediate conformation (e-fic) (focused on ntd-sd1-rbd-ace2) (Complex)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Human ace2 (Complex from Homo sapiens)
- D614g spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Release date: Feb. 5, 2025
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8z7g
Q-score: 0.486
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8z7g
Q-score: 0.486
To Be Published
Sample:
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 s trimer in the early fusion intermediate conformation (e-fic) (focused on intact s2) (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)