cryo-EM structure of PSII-LHCII megacomplex from spinach
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 8z9d
Q-score: 0.452
Shan J, Niedzwiedzki DM, Tomar RS, Liu Z, Liu H
Sci Adv (2024) 10 pp. eadq9967-eadq9967 [ DOI: doi:10.1126/sciadv.adq9967 Pubmed: 39671473 ]
- Photosystem ii reaction center proteins psby, chloroplastic (20 kDa, Protein from Spinacia oleracea)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Spinacia oleracea)
- Chloride ion (35 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Spinacia oleracea)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Spinacia oleracea)
- Photosystem ii reaction center protein l (4 kDa, Protein from Spinacia oleracea)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center protein k (6 kDa, Protein from Spinacia oleracea)
- Psii-lhcii megacomplex (Complex from Spinacia oleracea)
- Oxygen-evolving enhancer protein 3, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem ii reaction center x protein, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii cp43 reaction center protein (51 kDa, Protein from Spinacia oleracea)
- Photosystem ii reaction center w protein, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii 10 kda polypeptide, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- Photosystem ii reaction center protein j (4 kDa, Protein from Spinacia oleracea)
- Photosystem ii reaction center protein i (4 kDa, Protein from Spinacia oleracea)
- Chlorophyll a-b binding protein, chloroplastic (31 kDa, Protein from Spinacia oleracea)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii 5 kda protein, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- Photosystem ii reaction center protein t (3 kDa, Protein from Spinacia oleracea)
- Photosystem ii d2 protein (39 kDa, Protein from Spinacia oleracea)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (31 kDa, Protein from Spinacia oleracea)
- Oxygen-evolving enhancer protein 1, chloroplastic (35 kDa, Protein from Spinacia oleracea)
- Cytochrome b559 subunit beta (4 kDa, Protein from Spinacia oleracea)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem ii protein d1 (38 kDa, Protein from Spinacia oleracea)
- Bicarbonate ion (61 Da, Ligand)
- Oxygen-evolving enhancer protein 2, chloroplastic (28 kDa, Protein from Spinacia oleracea)
- Chlorophyll a-b binding protein cp24, chloroplastic (27 kDa, Protein from Spinacia oleracea)
- Photosystem ii reaction center protein m (3 kDa, Protein from Spinacia oleracea)
- Chlorophyll a (893 Da, Ligand)
- Photosystem ii reaction center protein h (7 kDa, Protein from Spinacia oleracea)
- Fe (ii) ion (55 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Spinacia oleracea)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Spinacia oleracea)
- Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Spinacia oleracea)
Structure of the alpha2A-adrenergic receptor GoA signaling complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7ej0
Q-score: 0.426
Xu J, Cao S, Hubner H, Weikert D, Chen G, Lu Q, Yuan D, Gmeiner P, Liu Z, Du Y
Sci Adv (2022) 8 pp. eabj5347-eabj5347 [ DOI: doi:10.1126/sciadv.abj5347 Pubmed: 35245122 ]
- Scfv16 (32 kDa, Protein from Mus musculus)
- Noradrenaline (170 Da, Ligand)
- Guanine nucleotide-binding protein g(o) subunit alpha (40 kDa, Protein from Homo sapiens)
- Alpha2a-adrenergic receptor go signaling complex (Complex)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Homo sapiens)
- Alpha-2a adrenergic receptor (50 kDa, Protein from Homo sapiens)
- Scfv16 (Complex from Mus musculus)
- Alpha2a-adrenergic receptor go signaling complex (Complex from Homo sapiens)
Structure of the alpha2A-adrenergic receptor GoA signaling complex bound to brimonidine
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ej8
Q-score: 0.482
Xu J, Cao S, Hubner H, Weikert D, Chen G, Lu Q, Yuan D, Gmeiner P, Liu Z, Du Y
Sci Adv (2022) 8 pp. eabj5347-eabj5347 [ DOI: doi:10.1126/sciadv.abj5347 Pubmed: 35245122 ]
- Scfv16 (32 kDa, Protein from Mus musculus)
- Brimonidine (292 Da, Ligand)
- Guanine nucleotide-binding protein g(o) subunit alpha (40 kDa, Protein from Homo sapiens)
- Alpha2a-adrenergic receptor go signaling complex (Complex)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Homo sapiens)
- Alpha-2a adrenergic receptor (50 kDa, Protein from Homo sapiens)
- Scfv16 (Complex from Mus musculus)
- Alpha2a-adrenergic receptor go signaling complex (Complex from Homo sapiens)
Structure of the alpha2A-adrenergic receptor GoA signaling complex bound to dexmedetomidine
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7eja
Q-score: 0.378
Xu J, Cao S, Hubner H, Weikert D, Chen G, Lu Q, Yuan D, Gmeiner P, Liu Z, Du Y
Sci Adv (2022) 8 pp. eabj5347-eabj5347 [ DOI: doi:10.1126/sciadv.abj5347 Pubmed: 35245122 ]
- Scfv16 (32 kDa, Protein from Mus musculus)
- 4-[(1~{s})-1-(2,3-dimethylphenyl)ethyl]-1~{h}-imidazole (200 Da, Ligand)
- Guanine nucleotide-binding protein g(o) subunit alpha (40 kDa, Protein from Homo sapiens)
- Alpha2a-adrenergic receptor go signaling complex (Complex)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Homo sapiens)
- Alpha-2a adrenergic receptor (50 kDa, Protein from Homo sapiens)
- Scfv16 (Complex from Mus musculus)
- Alpha2a-adrenergic receptor go signaling complex (Complex from Homo sapiens)
Structure of the alpha2A-adrenergic receptor GoA signaling complex bound to oxymetazoline
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ejk
Q-score: 0.453
Xu J, Cao S, Hubner H, Weikert D, Chen G, Lu Q, Yuan D, Gmeiner P, Liu Z, Du Y
Sci Adv (2022) 8 pp. eabj5347-eabj5347 [ DOI: doi:10.1126/sciadv.abj5347 Pubmed: 35245122 ]
- Scfv16 (32 kDa, Protein from Mus musculus)
- Guanine nucleotide-binding protein g(o) subunit alpha (40 kDa, Protein from Homo sapiens)
- Alpha2a-adrenergic receptor go signaling complex (Complex)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Homo sapiens)
- Alpha-2a adrenergic receptor (50 kDa, Protein from Homo sapiens)
- Scfv16 (Complex from Mus musculus)
- Oxymetazoline (260 Da, Ligand)
- Alpha2a-adrenergic receptor go signaling complex (Complex from Homo sapiens)
CLC-7/Ostm1 membrane protein complex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7bxu
Q-score: 0.499
Zhang S, Liu Y, Zhang B, Zhou J, Li T, Liu Z, Li Y, Yang M
Sci Adv (2020) 6 pp. eabb4747-eabb4747 [ Pubmed: 32851177 DOI: doi:10.1126/sciadv.abb4747 ]
- Osteopetrosis-associated transmembrane protein 1 (37 kDa, Protein from Homo sapiens)
- Lysosomal membrane protein complex (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- H(+)/cl(-) exchange transporter 7 (88 kDa, Protein from Homo sapiens)
Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 3j9z
Q-score: 0.194
Li W, Liu Z, Koripella RK, Langlois R, Sanyal S, Frank J
Sci Adv (2015) 1 pp. e1500169-e1500169 [ Pubmed: 26229983 DOI: doi:10.1126/sciadv.1500169 ]
- Elongation factor g (Protein from Escherichia coli)
- 70s-p-trna-e-trna bound with ef-g h91a (2 MDa, Sample)
- 70s ribosome (2 MDa, Complex from Escherichia coli)
Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 3ja1
Q-score: 0.198
Li W, Liu Z, Koripella RK, Langlois R, Sanyal S, Frank J
Sci Adv (2015) 1 pp. e1500169-e1500169 [ Pubmed: 26229983 DOI: doi:10.1126/sciadv.1500169 ]
- Pre-translocational 70s ribosome complex (2 MDa, Sample)
- Elongation factor g (Protein from Escherichia coli)
- 70s ribosome (2 MDa, Complex from Escherichia coli)