Structure of KSHV glycoprotein B
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 8y48
Q-score: 0.452
Fang XY, Sun C, Liu Z, Zeng MS
To Be Published
- Envelope glycoprotein b (73 kDa, Protein from Human herpesvirus 8 strain GK18)
- Glycoprotein b (Complex from Human gammaherpesvirus 8)
Cryo-EM structure of the Cas9d-sgRNA-target DNA complex
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8zdr
Q-score: 0.541
To Be Published
- Dna (32-mer) (11 kDa, DNA from metagenome)
- Rna (144-mer) (51 kDa, RNA from metagenome)
- A protein (Complex from metagenome)
- Zinc ion (65 Da, Ligand)
- Dna (5'-d(p*cp*gp*gp*gp*tp*cp*ap*ap*ap*tp*g)-3') (11 kDa, DNA from metagenome)
- A protein (86 kDa, Protein from metagenome)
Cryo-EM structure of the Cas9d-sgRNA complex
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8zq9
Q-score: 0.47
To Be Published
- A protein (86 kDa, Protein from metagenome)
- Rna (128-mer) (51 kDa, RNA from metagenome)
- A protein (Complex from metagenome)
- Zinc ion (65 Da, Ligand)
Structure of Epstein-Barr virus major glycoprotein gp350 in complex with the receptor CR2
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 8zni
Q-score: 0.342
Sun C, Fang XY, Bu GL, Zhong LY, Xie C, Zhao GX, Sui SF, Liu Z, Zeng MS
Cell Rep (2025) 44 pp. 115168-115168 [ Pubmed: 39792550 DOI: doi:10.1016/j.celrep.2024.115168 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Glycoprotein gp350 in complex with the receptor cr2 (Complex from Human gammaherpesvirus 4)
- Complement receptor type 2 (106 kDa, Protein from Homo sapiens)
- Bllf1 (90 kDa, Protein from human gammaherpesvirus 4)
CryoEM structure of human XPR1 in complex with phosphate in state A
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9j51
Q-score: 0.468
Zhang W, Chen Y, Guan Z, Wang Y, Tang M, Du Z, Zhang J, Cheng M, Zuo J, Liu Y, Wang Q, Liu Y, Zhang D, Yin P, Ma L, Liu Z
Nat Commun (2025) 16 pp. 18-18 [ Pubmed: 39747008 DOI: doi:10.1038/s41467-024-55471-9 ]
- Human xpr1 (Complex from Homo sapiens)
- Solute carrier family 53 member 1 (84 kDa, Protein from Homo sapiens)
- Phosphate ion (94 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
CryoEM structure of human XPR1 in complex with phosphate in state B
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9j52
Q-score: 0.468
Zhang W, Chen Y, Guan Z, Wang Y, Tang M, Du Z, Zhang J, Cheng M, Zuo J, Liu Y, Wang Q, Liu Y, Zhang D, Yin P, Ma L, Liu Z
Nat Commun (2025) 16 pp. 18-18 [ Pubmed: 39747008 DOI: doi:10.1038/s41467-024-55471-9 ]
- Human xpr1 (Complex from Homo sapiens)
- Solute carrier family 53 member 1 (84 kDa, Protein from Homo sapiens)
- Phosphate ion (94 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
CryoEM structure of human XPR1 in complex with phosphate in state C
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9j53
Q-score: 0.413
Zhang W, Chen Y, Guan Z, Wang Y, Tang M, Du Z, Zhang J, Cheng M, Zuo J, Liu Y, Wang Q, Liu Y, Zhang D, Yin P, Ma L, Liu Z
Nat Commun (2025) 16 pp. 18-18 [ Pubmed: 39747008 DOI: doi:10.1038/s41467-024-55471-9 ]
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- Solute carrier family 53 member 1 (84 kDa, Protein from Homo sapiens)
- Human xpr1 (Complex from Homo sapiens)
CryoEM structure of human XPR1 in apo state
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9j4x
Q-score: 0.554
Zhang W, Chen Y, Guan Z, Wang Y, Tang M, Du Z, Zhang J, Cheng M, Zuo J, Liu Y, Wang Q, Liu Y, Zhang D, Yin P, Ma L, Liu Z
Nat Commun (2025) 16 pp. 18-18 [ Pubmed: 39747008 DOI: doi:10.1038/s41467-024-55471-9 ]
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Solute carrier family 53 member 1 (84 kDa, Protein from Homo sapiens)
- Human xpr1 (Complex from Homo sapiens)
ATAT-2 bound MEC-12/MEC-7 microtubule
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8y9f
Q-score: 0.446
Luo J, Lam WH, Yu D, Chao VC, Zopfi MN, Khoo CJ, Zhao C, Yan S, Liu Z, Li XD, Zheng C, Zhai Y, Ti SC
Nat Struct Mol Biol (2024) [ DOI: doi:10.1038/s41594-024-01406-3 Pubmed: 39496813 ]
- Tubulin alpha-3 chain (50 kDa, Protein from Caenorhabditis elegans)
- Tubulin beta-1 chain (49 kDa, Protein from Caenorhabditis elegans)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Mec-12/mec-7 microtubule in complex with full-length atat-2 (Complex from Caenorhabditis elegans)
- Alpha-tubulin n-acetyltransferase 2 (30 kDa, Protein from Caenorhabditis elegans)
- Tubulin alpha-3 chain (50 kDa, Protein from Caenorhabditis elegans)