Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 8z3w
Q-score: 0.297
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- D614g spike protein (s) in complex with one ace2 (Complex)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- D614g spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Human ace2 (Complex from Homo sapiens)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8z4x
Q-score: 0.271
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- D614g spike protein (s) in complex with two ace2s (Complex)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- D614g spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Human ace2 (Complex from Homo sapiens)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 8z64
Q-score: 0.415
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- D614g spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Human ace2 (Complex from Homo sapiens)
- D614g spike protein (s) in complex with three ace2s (focused on ntd-sd1-rbd-ace2) (Complex)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8z7b
Q-score: 0.577
To Be Published
- Human ace2 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- D614g spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 s trimer in the early fusion intermediate conformation (e-fic) (focused on ntd-sd1-rbd-ace2) (Complex)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8z7g
Q-score: 0.486
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 s trimer in the early fusion intermediate conformation (e-fic) (focused on intact s2) (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 8z7l
Q-score: 0.56
To Be Published
- Sars-cov-2 s trimer in the early fusion intermediate conformation (e-fic) (focused on s-bottom) (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of SARS-CoV-2 S trimer in the early fusion intermediate conformation (E-FIC)
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 8z7p
Q-score: 0.234
To Be Published
- Human ace2 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- D614g spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 s trimer in the early fusion intermediate conformation (e-fic) (Complex)
- Angiotensin-converting enzyme 2 (72 kDa, Protein from Homo sapiens)
Cryo-EM of helical fibers formed by two peptides Pyn-K6 and Pyn-(EY)3
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 9d70
Q-score: 0.39
Qiao Y, Zia A, Wu G, Liu Z, Guo J, Chu M, He H, Wang F, Xu B
J Am Chem Soc (2025) 147 pp. 2978-2983 [ Pubmed: 39808585 DOI: doi:10.1021/jacs.4c12150 ]
- Pyn-k6 + pyn-ey3 fiber (Complex from synthetic construct)
- Pyr-k6 (1 kDa, Protein from synthetic construct)
- (pyren-1-yl)acetic acid (260 Da, Ligand)
- Pyr-ey3 (1 kDa, Protein from synthetic construct)
Structure of Epstein-Barr virus major glycoprotein gp350 in complex with the receptor CR2
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 8zni
Q-score: 0.342
Sun C, Fang XY, Bu GL, Zhong LY, Xie C, Zhao GX, Sui SF, Liu Z, Zeng MS
Cell Rep (2025) 44 pp. 115168-115168 [ Pubmed: 39792550 DOI: doi:10.1016/j.celrep.2024.115168 ]
- Complement receptor type 2 (106 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bllf1 (90 kDa, Protein from human gammaherpesvirus 4)
- Glycoprotein gp350 in complex with the receptor cr2 (Complex from Human gammaherpesvirus 4)
CryoEM structure of human XPR1 in complex with phosphate in state A
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9j51
Q-score: 0.468
Zhang W, Chen Y, Guan Z, Wang Y, Tang M, Du Z, Zhang J, Cheng M, Zuo J, Liu Y, Wang Q, Liu Y, Zhang D, Yin P, Ma L, Liu Z
Nat Commun (2025) 16 pp. 18-18 [ DOI: doi:10.1038/s41467-024-55471-9 Pubmed: 39747008 ]
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Phosphate ion (94 Da, Ligand)
- Solute carrier family 53 member 1 (84 kDa, Protein from Homo sapiens)
- Human xpr1 (Complex from Homo sapiens)