Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8ymk
Q-score: 0.242
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7yff
Q-score: 0.445
Zhang J, Zhang M, Wang Q, Wen H, Liu Z, Wang F, Wang Y, Yao F, Song N, Kou Z, Li Y, Guo F, Zhu S
Nat Struct Mol Biol (2023) 30 pp. 629-639 [ DOI: doi:10.1038/s41594-023-00959-z Pubmed: 36959261 ]
- (2r)-4-(3-phosphonopropyl)piperazine-2-carboxylic acid (252 Da, Ligand)
- Glycine (75 Da, Ligand)
- Glutamate receptor ionotropic, nmda 1 (94 kDa, Protein from Homo sapiens)
- Glutamate receptor ionotropic, nmda 2d (97 kDa, Protein from Homo sapiens)
- Nmda receptor with nmda 1 incorperated with nmda 2d (384 MDa, Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of GluN1a-GluN2D NMDA receptor in complex with agonists glycine and glutamate.
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7yfl
Q-score: 0.404
Zhang J, Zhang M, Wang Q, Wen H, Liu Z, Wang F, Wang Y, Yao F, Song N, Kou Z, Li Y, Guo F, Zhu S
Nat Struct Mol Biol (2023) 30 pp. 629-639 [ DOI: doi:10.1038/s41594-023-00959-z Pubmed: 36959261 ]
- Glutamate receptor ionotropic, nmda 1 (95 kDa, Protein from Homo sapiens)
- Glycine (75 Da, Ligand)
- Glutamate receptor ionotropic, nmda 2d (97 kDa, Protein from Homo sapiens)
- Nmda receptor with nmda 1 incorperated with nmda 2d (384 MDa, Complex from Homo sapiens)
- Glutamic acid (147 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7yfg
Q-score: 0.478
Zhang J, Zhang M, Wang Q, Wen H, Liu Z, Wang F, Wang Y, Yao F, Song N, Kou Z, Li Y, Guo F, Zhu S
Nat Struct Mol Biol (2023) 30 pp. 629-639 [ DOI: doi:10.1038/s41594-023-00959-z Pubmed: 36959261 ]
- Rat glun1-glun2c nmda receptor in complex with glycine and glutamate (Cellular component from Rattus norvegicus)
- Glutamate receptor ionotropic, nmda 1 (97 kDa, Protein from Rattus norvegicus)
- Glycine (75 Da, Ligand)
- Glutamate receptor ionotropic, nmda 2c (87 kDa, Protein from Rattus norvegicus)
- Glutamic acid (147 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of the Rat GluN1-GluN2C NMDA receptor in complex with glycine, glutamate and (R)-PYD-106
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7yfh
Q-score: 0.535
Zhang J, Zhang M, Wang Q, Wen H, Liu Z, Wang F, Wang Y, Yao F, Song N, Kou Z, Li Y, Guo F, Zhu S
Nat Struct Mol Biol (2023) 30 pp. 629-639 [ DOI: doi:10.1038/s41594-023-00959-z Pubmed: 36959261 ]
- Rat glun1-glun2c nmda receptor in complex with glycine, glutamate and (r)-pyd-106 (Cellular component from Rattus norvegicus)
- Glutamate receptor ionotropic, nmda 1 (97 kDa, Protein from Rattus norvegicus)
- Glycine (75 Da, Ligand)
- Methyl 4-[(2~{r})-3-ethanoyl-1-[2-(2-methyl-1~{h}-indol-3-yl)ethyl]-4-oxidanyl-5-oxidanylidene-2~{h}-pyrrol-2-yl]benzoate (432 Da, Ligand)
- Glutamate receptor ionotropic, nmda 2c (87 kDa, Protein from Rattus norvegicus)
- Glutamic acid (147 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7yfi
Q-score: 0.401
Zhang J, Zhang M, Wang Q, Wen H, Liu Z, Wang F, Wang Y, Yao F, Song N, Kou Z, Li Y, Guo F, Zhu S
Nat Struct Mol Biol (2023) 30 pp. 629-639 [ DOI: doi:10.1038/s41594-023-00959-z Pubmed: 36959261 ]
- Glutamate receptor ionotropic, nmda 2c (91 kDa, Protein from Rattus norvegicus)
- Glycine (75 Da, Ligand)
- Rat tri-heteromeric glun1-glun2a-glun2c nmda receptor in complex with glycine and glutamate (Cellular component from Rattus norvegicus)
- Glutamate receptor (93 kDa, Protein from Rattus norvegicus)
- Glutamate receptor ionotropic, nmda 1 (89 kDa, Protein from Rattus norvegicus)
- Glutamic acid (147 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Human menin in complex with H3K79Me2 nucleosome
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8gpn
Q-score: 0.459
Lin J, Wu Y, Tian G, Yu D, Yang E, Lam WH, Liu Z, Jing Y, Dang S, Bao X, Wong JWH, Zhai Y, Li XD
Science (2023) 379 pp. 717-723 [ Pubmed: 36795828 DOI: doi:10.1126/science.adc9318 ]
- Isoform 2 of menin (Complex)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Isoform 2 of menin (67 kDa, Protein from Homo sapiens)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (177-mer) (Complex from Homo sapiens)
- Human menin in complex with nh3k79 dimethylated nucleosome (300 kDa, Complex from Xenopus laevis)
- Dna (177-mer) (54 kDa, DNA from Homo sapiens)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Nh3k79 dimethylated nucleosome (Complex)
- Dna (177-mer) (54 kDa, DNA from Homo sapiens)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
Local construction of SARS-CoV-2 S protein RBD in complex with XG014 Fab
Liu Z, Xu W, Chen Z, Fu W, Zhan W, Gao Y, Zhou J, Zhou Y, Wu J, Wang Q, Zhang X, Hao A, Wu W, Zhang Q, Li Y, Fan K, Chen R, Jiang Q, Mayer CT, Schoofs T, Xie Y, Jiang S, Wen Y, Yuan Z, Wang K, Lu L, Sun L, Wang Q
Protein Cell (2022) 13 pp. 655-675 [ Pubmed: 34554412 DOI: doi:10.1007/s13238-021-00871-6 ]
