respiratory syncytial virus nucleocapsid-like assembly
Resolution: 3.96 Å
EM Method: Single-particle
Fitted PDBs: 8iuo
Q-score: 0.364
Wang Y, Zhang C, Luo Y, Ling X, Luo B, Jia G, Su D, Dong H, Su Z
Signal Transduct Target Ther (2023) 8 pp. 323-323 [ DOI: doi:10.1038/s41392-023-01602-5 Pubmed: 37607909 ]
- Rna (35-mer) (10 kDa, RNA from Homo sapiens)
- Respiratory syncytial virus nucleocapsid-like assembly (Complex from Human respiratory syncytial virus A)
- Nucleoprotein (40 kDa, Protein from Human respiratory syncytial virus A)
BAM-EspP complex structure with BamA-G431C and G781C/EspP-N1293C and A1043C mutations in nanodisc
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ye4
Q-score: 0.389
Shen C, Chang S, Luo Q, Chan KC, Zhang Z, Luo B, Xie T, Lu G, Zhu X, Wei X, Dong C, Zhou R, Zhang X, Tang X, Dong H
Nature (2023) 617 pp. 185-193 [ Pubmed: 37100902 DOI: doi:10.1038/s41586-023-05988-8 ]
- Bam-espp complex with bama-g431c and g781c/espp-n1293c and a1043c mutations in nanodisc (Complex)
- Bam (Complex from Escherichia coli K-12)
- Outer membrane protein assembly factor bama (90 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamc (36 kDa, Protein from Escherichia coli K-12)
- Serine protease espp (38 kDa, Protein from Escherichia coli O157:H7)
- Outer membrane protein assembly factor bamd (27 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamb (41 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bame (13 kDa, Protein from Escherichia coli K-12)
- Espp (Complex from Escherichia coli O157:H7)
BAM-EspP complex structure with BamA-N427C/EspP-R1297C mutations in nanodisc
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ye6
Q-score: 0.275
Shen C, Chang S, Luo Q, Chan KC, Zhang Z, Luo B, Xie T, Lu G, Zhu X, Wei X, Dong C, Zhou R, Zhang X, Tang X, Dong H
Nature (2023) 617 pp. 185-193 [ Pubmed: 37100902 DOI: doi:10.1038/s41586-023-05988-8 ]
- Outer membrane protein assembly factor bama (90 kDa, Protein from Escherichia coli K-12)
- Bam (Complex from Escherichia coli K-12)
- Outer membrane protein assembly factor bamc (36 kDa, Protein from Escherichia coli K-12)
- Bam-espp complex structure with bama-n427c/espp-r1297c mutations in nanodisc (Complex)
- Serine protease espp (38 kDa, Protein from Escherichia coli O157:H7)
- Outer membrane protein assembly factor bamd (27 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamb (41 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bame (13 kDa, Protein from Escherichia coli K-12)
- Espp (Complex from Escherichia coli O157:H7)
BAM-EspP complex structure with BamA-G431C/EspP-N1293C mutations in nanodisc
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8bnz
Q-score: 0.337
Shen C, Chang S, Luo Q, Chan KC, Zhang Z, Luo B, Xie T, Lu G, Zhu X, Wei X, Dong C, Zhou R, Zhang X, Tang X, Dong H
Nature (2023) 617 pp. 185-193 [ Pubmed: 37100902 DOI: doi:10.1038/s41586-023-05988-8 ]
- Bam (Complex from Escherichia coli K-12)
- Outer membrane protein assembly factor bamc (36 kDa, Protein from Escherichia coli K-12)
- Bam-espp complex with bama-g431c/espp-n1293c mutations in nanodisc (Complex)
- Serine protease espp (38 kDa, Protein from Escherichia coli O157:H7)
- Outer membrane protein assembly factor bamd (27 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bama (90 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamb (41 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bame (13 kDa, Protein from Escherichia coli K-12)
- Espp (Complex from Escherichia coli O157:H7)
BAM-EspP complex structure with BamA-S425C/EspP-S1299C mutations in nanodisc
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8bo2
Q-score: 0.333
Shen C, Chang S, Luo Q, Chan KC, Zhang Z, Luo B, Xie T, Lu G, Zhu X, Wei X, Dong C, Zhou R, Zhang X, Tang X, Dong H
Nature (2023) 617 pp. 185-193 [ Pubmed: 37100902 DOI: doi:10.1038/s41586-023-05988-8 ]
- Bam (Complex from Escherichia coli K-12)
- Serine protease espp (38 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamc (36 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamd (27 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bama (88 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamb (41 kDa, Protein from Escherichia coli K-12)
- Bam-espp complex with bama-g431c/espp-n1293c mutations in nanodisc (Complex from Escherichia coli K-12)
- Outer membrane protein assembly factor bame (13 kDa, Protein from Escherichia coli K-12)
- Espp (Complex from Escherichia coli O157:H7)
The Tet-S2 state of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7xd5
Q-score: 0.504
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- The tet-s2 state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (5'-exon) (1 kDa, RNA from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (Complex from Tetrahymena thermophila)
- The tet-s2 state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (intron and 3'-exon) (129 kDa, RNA from Tetrahymena thermophila)
- Spermidine (145 Da, Ligand)
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7xd6
Q-score: 0.476
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Magnesium ion (24 Da, Ligand)
- The tet-s2 state with a pseudoknotted 4-way junction molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (intron and 3'-exon) (140 kDa, RNA from Tetrahymena thermophila)
- Co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (Complex from Tetrahymena thermophila)
- The tet-s2 state with a pseudoknotted 4-way junction molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (5'-exon) (8 kDa, RNA from Tetrahymena thermophila)
- Spermidine (145 Da, Ligand)
The relaxed pre-Tet-S1 state of wild-type Tetrahymena group I intron with 6nt 3'/5'-exon
Resolution: 4.05 Å
EM Method: Single-particle
Fitted PDBs: 7xd3
Q-score: 0.335
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Co-transcriptional folded wild-type tetrahymena group i intron with 6nt 3'/5'-exon (Complex from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- The relaxed pre-tet-s1 state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 6nt 3'/5'-exon (137 kDa, RNA from Tetrahymena thermophila)
The intermediate pre-Tet-S1 state of wild-type Tetrahymena group I intron with 6nt 3'/5'-exon
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 7xd4
Q-score: 0.32
The pre-Tet-C state of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 7xd7
Q-score: 0.473
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Spermidine (145 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- The pre-tet-c state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (130 kDa, RNA from Tetrahymena thermophila)
- Co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (Complex from Tetrahymena thermophila)