Complex Structure of Arginine Kinase McsB and McsA from Staphylococcus aureus
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8gqd
Q-score: 0.359
Lu K, Luo B, Tao X, Luo Y, Ao M, Zheng B, Xu X, Ma X, Niu J, Li H, Xie Y, Zhao Z, Zheng P, Wang G, Gao S, Wang C, Xia W, Su Z, Mao ZW
Nat Chem Biol (2024) [ DOI: doi:10.1038/s41589-024-01720-3 Pubmed: 39232187 ]
- Protein-arginine kinase activator protein (6 kDa, Protein from Staphylococcus aureus)
- Mcsa-mcsb complex (Complex from Staphylococcus aureus)
- Protein-arginine kinase (38 kDa, Protein from Staphylococcus aureus)
- Zinc ion (65 Da, Ligand)
The Tet-S2 state of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7xd5
Q-score: 0.504
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- The tet-s2 state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (5'-exon) (1 kDa, RNA from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (Complex from Tetrahymena thermophila)
- The tet-s2 state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (intron and 3'-exon) (129 kDa, RNA from Tetrahymena thermophila)
- Spermidine (145 Da, Ligand)
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7xd6
Q-score: 0.476
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Magnesium ion (24 Da, Ligand)
- The tet-s2 state with a pseudoknotted 4-way junction molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (intron and 3'-exon) (140 kDa, RNA from Tetrahymena thermophila)
- Co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (Complex from Tetrahymena thermophila)
- The tet-s2 state with a pseudoknotted 4-way junction molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (5'-exon) (8 kDa, RNA from Tetrahymena thermophila)
- Spermidine (145 Da, Ligand)
The relaxed pre-Tet-S1 state of wild-type Tetrahymena group I intron with 6nt 3'/5'-exon
Resolution: 4.05 Å
EM Method: Single-particle
Fitted PDBs: 7xd3
Q-score: 0.335
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Co-transcriptional folded wild-type tetrahymena group i intron with 6nt 3'/5'-exon (Complex from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- The relaxed pre-tet-s1 state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 6nt 3'/5'-exon (137 kDa, RNA from Tetrahymena thermophila)
The intermediate pre-Tet-S1 state of wild-type Tetrahymena group I intron with 6nt 3'/5'-exon
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 7xd4
Q-score: 0.32
The pre-Tet-C state of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 7xd7
Q-score: 0.473
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Spermidine (145 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- The pre-tet-c state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (130 kDa, RNA from Tetrahymena thermophila)
- Co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (Complex from Tetrahymena thermophila)
Resolution: 3.73 Å
EM Method: Single-particle
Fitted PDBs: 8hd6
Q-score: 0.319
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Spermidine (145 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Co-transcriptional folded g264a mutant tetrahymena group i intron with 6nt 5'/3'-exon and 2-aminopurine nucleoside (Complex from Tetrahymena thermophila)
- The relaxed pre-tet-s1 state molecule of co-transcriptional folded g264a mutant tetrahymena group i intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside (135 kDa, RNA from Tetrahymena thermophila)
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 8hd7
Q-score: 0.364
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Spermidine (145 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- The intermediate pre-tet-s1 state molecule of co-transcriptional folded g264a mutant tetrahymena group i intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside (135 kDa, RNA from Tetrahymena thermophila)
- Co-transcriptional folded g264a mutated tetrahymena group i intron with 6-nt 3'/5'-exon and 2-aminopurine nucleoside (Complex from Tetrahymena thermophila)
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8i7n
Q-score: 0.518
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- The tet-s1 state molecule of co-transcriptional folded g264a mutated tetrahymena group i intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside (134 kDa, RNA from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- (2r,3r,4s,5r)-2-(2-azanylpurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol (267 Da, Ligand)
- Co-transcriptional folded g264a mutated tetrahymena group i intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside (Complex from Tetrahymena thermophila)
- Spermidine (145 Da, Ligand)
Apo L-21 ScaI Tetrahymena ribozyme
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 7ez0
Q-score: 0.425