Cryo-EM structure of Pseudomonas aeruginosa RsmZ RNA in complex with two RsmA protein dimers
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7yr6
Q-score: 0.251
Jia X, Pan Z, Yuan Y, Luo B, Luo Y, Mukherjee S, Jia G, Liu L, Ling X, Yang X, Miao Z, Wei X, Bujnicki JM, Zhao K, Su Z
Cell Res (2023) 33 pp. 328-330 [ Pubmed: 36828938 DOI: doi:10.1038/s41422-023-00786-3 ]
- Rnp1-4 (Complex from Pseudomonas aeruginosa)
- Translational regulator csra (6 kDa, Protein from Pseudomonas aeruginosa)
- Rsmz rna (38 kDa, RNA from Pseudomonas aeruginosa)
Cryo-EM structure of Pseudomonas aeruginosa RsmZ RNA in complex with three RsmA protein dimers
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7yr7
Q-score: 0.292
Jia X, Pan Z, Yuan Y, Luo B, Luo Y, Mukherjee S, Jia G, Liu L, Ling X, Yang X, Miao Z, Wei X, Bujnicki JM, Zhao K, Su Z
Cell Res (2023) 33 pp. 328-330 [ Pubmed: 36828938 DOI: doi:10.1038/s41422-023-00786-3 ]
- Translational regulator csra (6 kDa, Protein from Pseudomonas aeruginosa)
- Rnp1-6 (Complex from Pseudomonas aeruginosa)
- Rsmz rna (118-mer) (38 kDa, RNA from Pseudomonas aeruginosa)
The Tet-S2 state of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7xd5
Q-score: 0.504
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- The tet-s2 state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (5'-exon) (1 kDa, RNA from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (Complex from Tetrahymena thermophila)
- The tet-s2 state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (intron and 3'-exon) (129 kDa, RNA from Tetrahymena thermophila)
- Spermidine (145 Da, Ligand)
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7xd6
Q-score: 0.476
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Magnesium ion (24 Da, Ligand)
- The tet-s2 state with a pseudoknotted 4-way junction molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (intron and 3'-exon) (140 kDa, RNA from Tetrahymena thermophila)
- Co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (Complex from Tetrahymena thermophila)
- The tet-s2 state with a pseudoknotted 4-way junction molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (5'-exon) (8 kDa, RNA from Tetrahymena thermophila)
- Spermidine (145 Da, Ligand)
The relaxed pre-Tet-S1 state of wild-type Tetrahymena group I intron with 6nt 3'/5'-exon
Resolution: 4.05 Å
EM Method: Single-particle
Fitted PDBs: 7xd3
Q-score: 0.335
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Co-transcriptional folded wild-type tetrahymena group i intron with 6nt 3'/5'-exon (Complex from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- The relaxed pre-tet-s1 state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 6nt 3'/5'-exon (137 kDa, RNA from Tetrahymena thermophila)
The intermediate pre-Tet-S1 state of wild-type Tetrahymena group I intron with 6nt 3'/5'-exon
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 7xd4
Q-score: 0.32
The pre-Tet-C state of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 7xd7
Q-score: 0.473
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Spermidine (145 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- The pre-tet-c state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (130 kDa, RNA from Tetrahymena thermophila)
- Co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (Complex from Tetrahymena thermophila)
Resolution: 3.73 Å
EM Method: Single-particle
Fitted PDBs: 8hd6
Q-score: 0.319
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Spermidine (145 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Co-transcriptional folded g264a mutant tetrahymena group i intron with 6nt 5'/3'-exon and 2-aminopurine nucleoside (Complex from Tetrahymena thermophila)
- The relaxed pre-tet-s1 state molecule of co-transcriptional folded g264a mutant tetrahymena group i intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside (135 kDa, RNA from Tetrahymena thermophila)
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 8hd7
Q-score: 0.364
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Spermidine (145 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- The intermediate pre-tet-s1 state molecule of co-transcriptional folded g264a mutant tetrahymena group i intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside (135 kDa, RNA from Tetrahymena thermophila)
- Co-transcriptional folded g264a mutated tetrahymena group i intron with 6-nt 3'/5'-exon and 2-aminopurine nucleoside (Complex from Tetrahymena thermophila)
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8i7n
Q-score: 0.518
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- The tet-s1 state molecule of co-transcriptional folded g264a mutated tetrahymena group i intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside (134 kDa, RNA from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- (2r,3r,4s,5r)-2-(2-azanylpurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol (267 Da, Ligand)
- Co-transcriptional folded g264a mutated tetrahymena group i intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside (Complex from Tetrahymena thermophila)
- Spermidine (145 Da, Ligand)