Structure of PfNT1(Y190A)-GFP in complex with GSK4
Resolution: 4.04 Å
EM Method: Single-particle
Fitted PDBs: 7ydq
Q-score: 0.31
Cryo-EM structure of CD38 in complex with FTL004
Resolution: 3.86 Å
EM Method: Single-particle
Fitted PDBs: 8il3
Q-score: 0.387
Zhang G, Guo C, Wang Y, Zhang X, Liu S, Qu W, Chen C, Yan L, Yang Z, Zhang Z, Jiang X, Chen X, Liu H, Lai Q, Wei X, Lu Y, Zhao S, Deng H, Wang Y, Yu L, Yu H, Wu Y, Su Z, Chen P, Ren Z, Yu M, Qu F, Luo Y, Gou L, Li Q, Huang Y, Ma F, Yang J
J Hematol Oncol (2022) 15 pp. 177-177 [ DOI: doi:10.1186/s13045-022-01395-0 Pubmed: 36581954 ]
- Heavy chain (22 kDa, Protein from Homo sapiens)
- Light chain (23 kDa, Protein from Homo sapiens)
- Cryo-em structure of cd38 in complex with ftl004 (Complex from Homo sapiens)
- Adp-ribosyl cyclase/cyclic adp-ribose hydrolase 1 (26 kDa, Protein from Homo sapiens)
Cryo-EM structure of a eukaryotic ZnT8 in the presence of zinc
Resolution: 3.85 Å
EM Method: Single-particle
Fitted PDBs: 7y5g
Q-score: 0.438
Zhang S, Fu C, Luo Y, Xie Q, Xu T, Sun Z, Su Z, Zhou X
J Struct Biol (2022) 215 pp. 107926-107926 [ DOI: doi:10.1016/j.jsb.2022.107926 Pubmed: 36464198 ]
- Zinc transporter 8 (41 kDa, Protein from Xenopus tropicalis)
- Xtznt8 dimer complexed with zinc (Complex from Xenopus tropicalis)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of a eukaryotic ZnT8 at a low pH
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 7y5h
Q-score: 0.442
Zhang S, Fu C, Luo Y, Xie Q, Xu T, Sun Z, Su Z, Zhou X
J Struct Biol (2022) 215 pp. 107926-107926 [ DOI: doi:10.1016/j.jsb.2022.107926 Pubmed: 36464198 ]
- Zinc transporter 8 (41 kDa, Protein from Xenopus tropicalis)
- Xtznt8 dimer complexed with zinc and proton (Complex from Xenopus tropicalis)
- Zinc ion (65 Da, Ligand)
Cytochrome c-type biogenesis protein CcmABCD from E. coli
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7f02
Q-score: 0.491
Li J, Zheng W, Gu M, Han L, Luo Y, Yu K, Sun M, Zong Y, Ma X, Liu B, Lowder EP, Mendez DL, Kranz RG, Zhang K, Zhu J
Nat Commun (2022) 13 pp. 6422-6422 [ Pubmed: 36307425 DOI: doi:10.1038/s41467-022-34136-5 ]
- Phosphate ion (94 Da, Ligand)
- Cytochrome c-type biogenesis protein ccmabcd (130 kDa, Complex from Escherichia coli BL21(DE3))
- Magnesium ion (24 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Heme exporter protein b (23 kDa, Protein from Escherichia coli BL21(DE3))
- Cytochrome c biogenesis atp-binding export protein ccma (23 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein d (7 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein c (27 kDa, Protein from Escherichia coli BL21(DE3))
Cytochrome c-type biogenesis protein CcmABCD from E. coli in complex with ANP
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 7f03
Q-score: 0.498
Li J, Zheng W, Gu M, Han L, Luo Y, Yu K, Sun M, Zong Y, Ma X, Liu B, Lowder EP, Mendez DL, Kranz RG, Zhang K, Zhu J
Nat Commun (2022) 13 pp. 6422-6422 [ Pubmed: 36307425 DOI: doi:10.1038/s41467-022-34136-5 ]
- Cytochrome c-type biogenesis protein ccmabcd (130 kDa, Complex from Escherichia coli BL21(DE3))
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Water (18 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Heme exporter protein b (23 kDa, Protein from Escherichia coli BL21(DE3))
- Cytochrome c biogenesis atp-binding export protein ccma (23 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein d (7 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein c (27 kDa, Protein from Escherichia coli BL21(DE3))
Cytochrome c-type biogenesis protein CcmABCD from E. coli in complex with Heme and ATP.
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 7f04
Q-score: 0.561
Li J, Zheng W, Gu M, Han L, Luo Y, Yu K, Sun M, Zong Y, Ma X, Liu B, Lowder EP, Mendez DL, Kranz RG, Zhang K, Zhu J
Nat Commun (2022) 13 pp. 6422-6422 [ Pubmed: 36307425 DOI: doi:10.1038/s41467-022-34136-5 ]
- Cytochrome c-type biogenesis protein ccmabcd (130 kDa, Complex from Escherichia coli BL21(DE3))
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Water (18 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Heme exporter protein b (23 kDa, Protein from Escherichia coli BL21(DE3))
- Cytochrome c biogenesis atp-binding export protein ccma (23 kDa, Protein from Escherichia coli BL21(DE3))
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Heme exporter protein d (7 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein c (27 kDa, Protein from Escherichia coli BL21(DE3))
Cytochrome c-type biogenesis protein CcmABCD
Resolution: 3.98 Å
EM Method: Single-particle
Fitted PDBs: 7vfj
Q-score: 0.323
Li J, Zheng W, Gu M, Han L, Luo Y, Yu K, Sun M, Zong Y, Ma X, Liu B, Lowder EP, Mendez DL, Kranz RG, Zhang K, Zhu J
Nat Commun (2022) 13 pp. 6422-6422 [ Pubmed: 36307425 DOI: doi:10.1038/s41467-022-34136-5 ]
- Heme exporter protein b (23 kDa, Protein from Escherichia coli BL21(DE3))
- Cytochrome c biogenesis atp-binding export protein ccma (23 kDa, Protein from Escherichia coli BL21(DE3))
- The cytochrome c maturation complex ccmabcd. (130 kDa, Complex from Escherichia coli BL21(DE3))
- Heme exporter protein d (7 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein c (27 kDa, Protein from Escherichia coli BL21(DE3))
Cytochrome c-type biogenesis protein CcmABCD from E. coli in complex with heme and single ATP
Resolution: 4.03 Å
EM Method: Single-particle
Fitted PDBs: 7vfp
Q-score: 0.31
Li J, Zheng W, Gu M, Han L, Luo Y, Yu K, Sun M, Zong Y, Ma X, Liu B, Lowder EP, Mendez DL, Kranz RG, Zhang K, Zhu J
Nat Commun (2022) 13 pp. 6422-6422 [ Pubmed: 36307425 DOI: doi:10.1038/s41467-022-34136-5 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Water (18 Da, Ligand)
- Cytochrome c biogenesis atp-binding export protein ccma (22 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein b (23 kDa, Protein from Escherichia coli BL21(DE3))
- Protoporphyrin ix containing fe (616 Da, Ligand)
- The cytochrome c maturation complex ccmabcd (130 kDa, Complex from Escherichia coli BL21(DE3))
- Heme exporter protein d (7 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein c (27 kDa, Protein from Escherichia coli BL21(DE3))
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 7wld
Q-score: 0.615
Xu Y, Jia G, Li T, Zhou Z, Luo Y, Chao Y, Bao J, Su Z, Qu Q, Li D
Nat Commun (2022) 13 pp. 2617-2617 [ Pubmed: 35551457 DOI: doi:10.1038/s41467-022-30250-6 ]
- [(2~{r})-1-hexadecanoyloxy-3-[[(1~{s},2~{r},3~{r},4~{s},5~{s},6~{r})-2-hexadecanoyloxy-3,4,5,6-tetrakis(oxidanyl)cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-propan-2-yl] (9~{z},11~{z})-octadeca-9,11-dienoate (1 kDa, Ligand)
- Cardiolipin (1 kDa, Ligand)
- (4s,7r)-7-[(hexadecanoyloxy)methyl]-4-hydroxy-n,n,n-trimethyl-4,9-dioxo-3,5,8-trioxa-4lambda~5~-phosphahexacosan-1-aminium (763 Da, Ligand)
- Digitonin (1 kDa, Ligand)
- Gpi transamidase component pig-t (94 kDa, Protein from Homo sapiens)
- 2-azanylethyl [(2~{s},3~{s},4~{s},5~{s},6~{r})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate (303 Da, Ligand)
- Gpi transamidase complex (Complex from Homo sapiens)
- Phosphatidylinositol glycan anchor biosynthesis class u protein (80 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- 2-amino-2-deoxy-alpha-d-glucopyranose (179 Da, Ligand)
- Glycosylphosphatidylinositol anchor attachment 1 protein (96 kDa, Protein from Homo sapiens)
- Gpi transamidase component pig-s (90 kDa, Protein from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
- [(2r)-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] octadecanoate (720 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Gpi-anchor transamidase (73 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)