Human collagen prolyl processing enzyme complex, P3H1/CRTAP heterodimer
Resolution: 3.65 Å
EM Method: Single-particle
Fitted PDBs: 8k0e
Q-score: 0.407
Li W, Peng J, Yao D, Rao B, Xia Y, Wang Q, Li S, Cao M, Shen Y, Ma P, Liao R, Qin A, Zhao J, Cao Y
Nat Commun (2024) 15 pp. 7844-7844 [ Pubmed: 39245686 DOI: doi:10.1038/s41467-024-52321-6 ]
- Fe (iii) ion (55 Da, Ligand)
- A protein modification binary complex (Complex from Homo sapiens)
- Cartilage-associated protein (50 kDa, Protein from Homo sapiens)
- Prolyl 3-hydroxylase 1 (83 kDa, Protein from Homo sapiens)
Human collagen prolyl processing enzyme complex, P3H1/CRTAP/PPIB heterotrimer, in its apo state
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 8k0f
Q-score: 0.512
Li W, Peng J, Yao D, Rao B, Xia Y, Wang Q, Li S, Cao M, Shen Y, Ma P, Liao R, Qin A, Zhao J, Cao Y
Nat Commun (2024) 15 pp. 7844-7844 [ Pubmed: 39245686 DOI: doi:10.1038/s41467-024-52321-6 ]
- Cartilage-associated protein (50 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- A protein modification ternary complex (Complex from Homo sapiens)
- Prolyl 3-hydroxylase 1 (83 kDa, Protein from Homo sapiens)
- Peptidyl-prolyl cis-trans isomerase b (28 kDa, Protein from Homo sapiens)
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 8k0i
Q-score: 0.435
Li W, Peng J, Yao D, Rao B, Xia Y, Wang Q, Li S, Cao M, Shen Y, Ma P, Liao R, Qin A, Zhao J, Cao Y
Nat Commun (2024) 15 pp. 7844-7844 [ Pubmed: 39245686 DOI: doi:10.1038/s41467-024-52321-6 ]
- Cartilage-associated protein (50 kDa, Protein from Homo sapiens)
- A protein modification hexamer complex (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Prolyl 3-hydroxylase 1 (83 kDa, Protein from Homo sapiens)
- Peptidyl-prolyl cis-trans isomerase b (28 kDa, Protein from Homo sapiens)
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 8k0m
Q-score: 0.531
Li W, Peng J, Yao D, Rao B, Xia Y, Wang Q, Li S, Cao M, Shen Y, Ma P, Liao R, Qin A, Zhao J, Cao Y
Nat Commun (2024) 15 pp. 7844-7844 [ Pubmed: 39245686 DOI: doi:10.1038/s41467-024-52321-6 ]
- 2-oxoglutaric acid (146 Da, Ligand)
- Cartilage-associated protein (50 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Prolyl 3-hydroxylase 1 (83 kDa, Protein from Homo sapiens)
- Peptidyl-prolyl cis-trans isomerase b (28 kDa, Protein from Homo sapiens)
- A protein modification complex bound with co-substrate (Complex from Homo sapiens)
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 8k17
Q-score: 0.554
Li W, Peng J, Yao D, Rao B, Xia Y, Wang Q, Li S, Cao M, Shen Y, Ma P, Liao R, Qin A, Zhao J, Cao Y
Nat Commun (2024) 15 pp. 7844-7844 [ Pubmed: 39245686 DOI: doi:10.1038/s41467-024-52321-6 ]
- Cartilage-associated protein (50 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- A protein modification complex with synthetic substrate (Complex from Homo sapiens)
- Fe (iii) ion (55 Da, Ligand)
- Prolyl 3-hydroxylase 1 (83 kDa, Protein from Homo sapiens)
- Peptidyl-prolyl cis-trans isomerase b (28 kDa, Protein from Homo sapiens)
- Synthetic substrate (1 kDa, Protein from Homo sapiens)
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 8kc9
Q-score: 0.399
Li W, Peng J, Yao D, Rao B, Xia Y, Wang Q, Li S, Cao M, Shen Y, Ma P, Liao R, Qin A, Zhao J, Cao Y
Nat Commun (2024) 15 pp. 7844-7844 [ Pubmed: 39245686 DOI: doi:10.1038/s41467-024-52321-6 ]
- Fe (iii) ion (55 Da, Ligand)
- A protein modification complex bound with an inhibitor (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cartilage-associated protein (50 kDa, Protein from Homo sapiens)
- Prolyl 3-hydroxylase 1 (83 kDa, Protein from Homo sapiens)
- Peptidyl-prolyl cis-trans isomerase b (28 kDa, Protein from Homo sapiens)
- Dsn-mle-mle-mva-bmt-aba-sar-mle-val-mle-ala (1 kDa, Protein from Tolypocladium inflatum)
Structure of AmCas12a with crRNA
Feng Y, Zhang X, Shi J, Ma P, Tang J, Huang X
To Be Published
- Crispr-associated endonuclease cas12a (157 kDa, Protein from Anaeroglobus)
- Structure of amcas12a with crrna (Complex from Anaeroglobus)
- Magnesium ion (24 Da, Ligand)
- Rna (44-mer) (14 kDa, RNA from Anaeroglobus)
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 7yix
Q-score: 0.552
Yu Y, Rong K, Yao D, Zhang Q, Cao X, Rao B, Xia Y, Lu Y, Shen Y, Yao Y, Xu H, Ma P, Cao Y, Qin A
Nat Commun (2023) 14 pp. 4048-4048 [ DOI: doi:10.1038/s41467-023-39833-3 Pubmed: 37422472 ]
- Magnesium ion (24 Da, Ligand)
- Halpl-scfv (Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Scfv (28 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Alkaline phosphatase, tissue-nonspecific isozyme (57 kDa, Protein from Homo sapiens)